Detail information of GWHGAAZE008854


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006424796.10hypothetical protein CICLE_v10028493mg [Citrus clementina]
Swissprottr|O49840|APK2B_ARATH3E-158Protein kinase 2B, chloroplastic (Precursor)
trEMBLtr|V4SLS8|V4SLS8_9ROSI0Uncharacterized protein {ECO:0000313|EMBL:ESR38036.1}
TAIR10AT2G02800.22E-128protein kinase 2B

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene9472251894727336-
GWHAAZE00000002mRNA9472251894727336-
GWHAAZE00000002exon9472251894722930-
GWHAAZE00000002exon9472354294723665-
GWHAAZE00000002exon9472374894723920-
GWHAAZE00000002exon9472437494724509-
GWHAAZE00000002exon9472462194724961-
GWHAAZE00000002exon9472727694727336-
GWHAAZE00000002CDS9472727694727336-
GWHAAZE00000002CDS9472462194724961-
GWHAAZE00000002CDS9472437494724509-
GWHAAZE00000002CDS9472374894723920-
GWHAAZE00000002CDS9472354294723665-
GWHAAZE00000002CDS9472251894722930-
Transcript Sequence

Network for GWHGAAZE008854

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07714.18PK_Tyr_Ser-Thr853737.20E-47
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.709
SRR3591706second leaf0.175
SRR3591707mature leaf1.103
SRR3591708Shoot apex0.904
SRR3591709Stem3.921
SRR3591710White floral bud1.808
SRR3591711White flower2.753
SRR3591712Green floral bud1.092
SRR3591713Yellow flower5.305
SRP173429 SRR8316895Juvenile bud stage 1.184
SRR8316896Juvenile bud stage 0.974
SRR8316897Juvenile bud stage 1.561
SRR8316894Third green stage 0.241
SRR8316900Third green stage 0.400
SRR8316901Third green stage 0.785
SRR8316898Complete white stage 0.565
SRR8316899Complete white stage 1.775
SRR8316903Complete white stage 0.521
SRR8316902Silver flowering stage1.672
SRR8316904Silver flowering stage1.691
SRR8316905Silver flowering stage1.012
SRR8316906Gold flowering stage 6.576
SRR8316907Gold flowering stage 3.381
SRR8316908Gold flowering stage 11.356
SRP132670SRR6706286Control1.412
SRR6706287Light intensity 50%0.977
SRR6706288Light intensity 20%0.720
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.793
CNS0095593Slightly white alabastrum(diploid) 20.589
CNS0095594Slightly white alabastrum(diploid) 31.595
CNS0095595Whole white alabastrum(diploid) 20.705
CNS0095596Whole white alabastrum(diploid) 30.093
CNS0095597Whole white alabastrum(diploid) 40.947
CNS0095598Silvery flower (diploied) 10.974
CNS0095599Silvery flower (diploied) 21.097
CNS0095600Silvery flower (diploied) 31.960
CNS0095601Golden flower (diploid) 11.847
CNS0095602Golden flower (diploid) 22.143
CNS0095603Golden flower (diploid) 32.796
CNS0095604Slightly white alabastrum(tetraploid) 10.457
CNS0095605Slightly white alabastrum(tetraploid) 20.184
CNS0095606Slightly white alabastrum(tetraploid) 30.325
CNS0095607Whole white alabastrum(tetraploid) 10.479
CNS0095608Whole white alabastrum(tetraploid) 20.168
CNS0095609Whole white alabastrum(tetraploid) 30.539
CNS0095610Silvery flower (tetraploid) 11.139
CNS0095611Silvery flower (tetraploid) 20.378
CNS0095612Silvery flower (tetraploid) 31.013
CNS0095613Golden flower (tetraploid) 10.805
CNS0095614Golden flower (tetraploid) 23.332
CNS0095615Golden flower (tetraploid) 30.283
CRA001975CRR073297Stem 10.932
CRR073298Stem 20.484
CRR073299Stem 30.218
CRR073300Leaf 10.976
CRR073301Leaf 21.634
CRR073302Leaf 30.699
CRR073303Juvenile bud 10.299
CRR073304Juvenile bud 20.518
CRR073305Juvenile bud 30.245
CRR073306Third green 10.060
CRR073307Third green 20.054
CRR073308Third green 30.021
CRR073309Second white 10.490
CRR073310Second white 20.601
CRR073311Second white 30.604
CRR073312Silver flowering 12.742
CRR073313Silver flowering 21.390
CRR073314Silver flowering 31.892
CRR073315Gold flowering 11.645
CRR073316Gold flowering 21.602
CRR073317Gold flowering 31.582
CRR073318Tawny withering 18.841
CRR073319Tawny withering 211.303
CRR073320Tawny withering 34.289