Gene detail

Detail information of GWHGAAZE008848

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009384991.1	1.03027E-40	PREDICTED: RGS domain-containing serine/threonine-protein kinase A-like isoform X1 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9FPR3\|EDR1_ARATH	5E-28	Serine/threonine-protein kinase EDR1
trEMBL	tr\|F6H722\|F6H722_VITVI	1E-40	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB47969.1}
TAIR10	AT1G67890.2	3E-37	PAS domain-containing protein tyrosine kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	94536430	94538983	-
GWHAAZE00000002	mRNA	94536430	94538983	-
GWHAAZE00000002	exon	94536430	94536591	-
GWHAAZE00000002	exon	94536714	94536795	-
GWHAAZE00000002	exon	94536896	94536945	-
GWHAAZE00000002	exon	94537180	94537277	-
GWHAAZE00000002	exon	94537413	94537558	-
GWHAAZE00000002	exon	94538140	94538241	-
GWHAAZE00000002	exon	94538949	94538983	-
GWHAAZE00000002	five_prime_UTR	94538949	94538983	-
GWHAAZE00000002	five_prime_UTR	94538140	94538241	-
GWHAAZE00000002	five_prime_UTR	94537534	94537558	-
GWHAAZE00000002	CDS	94537413	94537533	-
GWHAAZE00000002	CDS	94537180	94537277	-
GWHAAZE00000002	CDS	94536896	94536945	-
GWHAAZE00000002	CDS	94536714	94536795	-
GWHAAZE00000002	CDS	94536430	94536591	-

Transcript Sequence
>GWHTAAZE008858 ATGAGTACTGATAATTTTGATTTGATATATAGTCTGTGTGCTACTCTGCGCTGCTGCTATGCACCACTGCTGTGCACTGTTGGGCCGAGCTGCACAACTGCAGACTTGGCTACTCGCTACATATTGAACTTCAATTAAGGGAGTTTGTTCCGGTTTCTACGGATGAATCAATCCAAATTTGACTTGAGACGTTGTGTTCACATGGCATTGGATATAGTGAGCATAGAAATTAAATTTATAGGATGGAGTATATACATGCTTCGTACTGGGACACCAATTGCTGGCACGAGGTGTGAATTACCTTCATCACTGCAACCCACTATTATTCATTGTGATTTAAGGTCTCCAAATCTTCTCATTGATAAGAATTGGATTGTTAAGCCTCAATGGATGGCTCCTGAAGTTCTTCGTAATGAACCCTCTGATGAAAAGCCCGATGTCCACAGCTATAGGGTAGTCTTATGGGAACTTGTCACTGAAAAGATCCCTTGGGAGAATCTCAGCTCGATGCAGGTAATTGAAGCCGAAGGAGTATTCATGGACCATCGACTTGAGACACCAAAATATATGGATCTGTGGTGGGTTTCAATGATCGAGAGCTGTTGGTACAGGTTAGTATCTTTCGAAGTTGTTCAAAGCTTAGTAGCCAATTGTTGTAGAAACATTTTCCATTGA

Network for GWHGAAZE008848

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	74	149	4.80E-11

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL_CTR1-DRK-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.021
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.323
	SRR8316896	Juvenile bud stage	0.553
	SRR8316897	Juvenile bud stage	0.393
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	1.255
	SRR8316901	Third green stage	0.624
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.462
	SRR8316902	Silver flowering stage	0.087
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.173
SRP132670	SRR6706286	Control	0.100
	SRR6706287	Light intensity 50%	0.265
	SRR6706288	Light intensity 20%	0.120
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.487
	CNS0095593	Slightly white alabastrum(diploid) 2	0.133
	CNS0095594	Slightly white alabastrum(diploid) 3	0.540
	CNS0095595	Whole white alabastrum(diploid) 2	1.451
	CNS0095596	Whole white alabastrum(diploid) 3	1.102
	CNS0095597	Whole white alabastrum(diploid) 4	1.154
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.089
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.053
	CNS0095602	Golden flower (diploid) 2	0.003
	CNS0095603	Golden flower (diploid) 3	0.102
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.300
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.067
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.004
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.603
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.883
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.940
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.148
	CNS0095612	Silvery flower (tetraploid) 3	0.067
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.002
CRA001975	CRR073297	Stem 1	0.990
	CRR073298	Stem 2	0.446
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.549
	CRR073301	Leaf 2	0.354
	CRR073302	Leaf 3	0.244
	CRR073303	Juvenile bud 1	0.423
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.119
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.004
	CRR073311	Second white 3	0.005
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.475
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.642
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000