Gene detail

Detail information of GWHGAAZE008844

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008806967.1	5.0141E-123	PREDICTED: 60S ribosomal protein L10a-2 [Phoenix dactylifera]
Swissprot	tr\|Q8VZB9\|R10A1_ARATH	5E-115	60S ribosomal protein L10a-1
trEMBL	tr\|A0A059ABT7\|A0A059ABT7_EUCGR	3E-123	Ribosomal protein {ECO:0000256\|RuleBase:RU000659}
TAIR10	AT1G08360.1	7E-91	Ribosomal protein L1p/L10e family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	94450768	94453278	+
GWHAAZE00000002	mRNA	94450768	94453278	+
GWHAAZE00000002	exon	94450768	94451019	+
GWHAAZE00000002	exon	94451503	94451668	+
GWHAAZE00000002	exon	94451870	94452109	+
GWHAAZE00000002	exon	94452894	94453278	+
GWHAAZE00000002	CDS	94450768	94451019	+
GWHAAZE00000002	CDS	94451503	94451668	+
GWHAAZE00000002	CDS	94451870	94452109	+
GWHAAZE00000002	CDS	94452894	94453009	+
GWHAAZE00000002	three_prime_UTR	94453010	94453278	+

Transcript Sequence
>GWHTAAZE008854 ATGACTTTGTTGCATACTATTTCACGCAGTAAGCTTCAGAGTGATGCCCTGAGAGAGGCCATAACTCAGATTTCTAATGATGCAAAGGGTGAAAAGAAGCGTAATTTCACCGAAACTATTGAGCTCCAGATTGGGCTTAAGAACTATGATCCCCAAAAGGATAAGCGTTTCAGTGGGTCTGTGAAGTTGCCCCATATTCCTCGTCCTAAGATGAAGGTTTGCATGCTTGGTGATGCTCAGCATGTGGAAGAGGCAGAAAAGATAGGTTTAGAATACATGGACGTTGAGGGGCTGAAGAAACTCAACAAGAACAAGAAATTGGTGAAGAAGCTTGCTAAGAAATACCATGCTTTCTTAGCTTCTGAAGCCGTCATCAAACAGATTCCCAGACTTTTAGGCCCTGGCCTAAACAAGGCAGGGAAGTTCCCTACACTTGTTACACACCAGGAATCTTTGGAGTCTAAAGTTAATGAAATAAAGGCGACAGTCAAGTTCCAGTTGAAGAAGGTACTGTGCATGGGAGTTGCTGTGGGTAACTGCAGTATGGAGGAGAAGCAGATCTTTCAGAACGTTCAGATGAGCGTCAATTTTCTTGTCTCTTTATTGAAGAAGAACTGGCAAAACGTGAGTCTTTCATTCTTGTCTCTATTTAGTTTGCGTGAGGTGCTTGTACCTCAAGAGTACAATGGGGAAGCCGGTCCGCATCTTTTAAGGTATGCTTTGCTCTTTTATTGGAGCAGTATAAGGAGTAAGTTGTATGAGCAATTACTTTAAAATGTTTCCGTTAATAGACAACAGTTTTTTGTGTTTAAATCTCCCAATTTTCCTTATCATTTGATAATATGTTGAATGTGGCAAACTATGATATGTTTCGTTTCTTGTACTCAATGGTACTGATAGTAATGCATGTCGAGATATTTTTAGTGTTAGTGCTCTTAAATTTATATTGAACCATTTTTAGGTGCTCTCAAATTATTTGTATGTGATTTTAAGGGTTACAATTTTTAGACATTTTTTATATTAAATAACATTTCTCTTAAATA

Network for GWHGAAZE008844

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00687.22	Ribosomal_L1	32	214	2.70E-41

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02865	RP-L10Ae, RPL10A	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0015934	cellular_component	large ribosomal subunit
GO:0003723	molecular_function	RNA binding
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	61.555
	SRR3591706	second leaf	26.388
	SRR3591707	mature leaf	22.213
	SRR3591708	Shoot apex	66.466
	SRR3591709	Stem	34.502
	SRR3591710	White floral bud	23.575
	SRR3591711	White flower	30.643
	SRR3591712	Green floral bud	29.857
	SRR3591713	Yellow flower	31.843
SRP173429	SRR8316895	Juvenile bud stage	42.960
	SRR8316896	Juvenile bud stage	56.836
	SRR8316897	Juvenile bud stage	29.166
	SRR8316894	Third green stage	22.536
	SRR8316900	Third green stage	63.572
	SRR8316901	Third green stage	52.152
	SRR8316898	Complete white stage	16.564
	SRR8316899	Complete white stage	66.305
	SRR8316903	Complete white stage	27.839
	SRR8316902	Silver flowering stage	15.499
	SRR8316904	Silver flowering stage	16.461
	SRR8316905	Silver flowering stage	8.618
	SRR8316906	Gold flowering stage	29.889
	SRR8316907	Gold flowering stage	29.698
	SRR8316908	Gold flowering stage	36.553
SRP132670	SRR6706286	Control	90.537
	SRR6706287	Light intensity 50%	97.141
	SRR6706288	Light intensity 20%	88.811
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	40.656
	CNS0095593	Slightly white alabastrum(diploid) 2	45.083
	CNS0095594	Slightly white alabastrum(diploid) 3	35.306
	CNS0095595	Whole white alabastrum(diploid) 2	48.153
	CNS0095596	Whole white alabastrum(diploid) 3	68.737
	CNS0095597	Whole white alabastrum(diploid) 4	52.255
	CNS0095598	Silvery flower (diploied) 1	22.087
	CNS0095599	Silvery flower (diploied) 2	38.476
	CNS0095600	Silvery flower (diploied) 3	25.767
	CNS0095601	Golden flower (diploid) 1	15.835
	CNS0095602	Golden flower (diploid) 2	26.861
	CNS0095603	Golden flower (diploid) 3	14.801
	CNS0095604	Slightly white alabastrum(tetraploid) 1	29.146
	CNS0095605	Slightly white alabastrum(tetraploid) 2	40.949
	CNS0095606	Slightly white alabastrum(tetraploid) 3	62.796
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.037
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.771
	CNS0095609	Whole white alabastrum(tetraploid) 3	51.968
	CNS0095610	Silvery flower (tetraploid) 1	24.564
	CNS0095611	Silvery flower (tetraploid) 2	13.131
	CNS0095612	Silvery flower (tetraploid) 3	16.452
	CNS0095613	Golden flower (tetraploid) 1	20.765
	CNS0095614	Golden flower (tetraploid) 2	24.539
	CNS0095615	Golden flower (tetraploid) 3	16.890
CRA001975	CRR073297	Stem 1	41.718
	CRR073298	Stem 2	63.189
	CRR073299	Stem 3	50.644
	CRR073300	Leaf 1	67.282
	CRR073301	Leaf 2	63.689
	CRR073302	Leaf 3	73.881
	CRR073303	Juvenile bud 1	69.673
	CRR073304	Juvenile bud 2	54.624
	CRR073305	Juvenile bud 3	51.383
	CRR073306	Third green 1	11.402
	CRR073307	Third green 2	9.776
	CRR073308	Third green 3	14.637
	CRR073309	Second white 1	10.431
	CRR073310	Second white 2	16.356
	CRR073311	Second white 3	9.462
	CRR073312	Silver flowering 1	11.857
	CRR073313	Silver flowering 2	14.892
	CRR073314	Silver flowering 3	6.318
	CRR073315	Gold flowering 1	25.597
	CRR073316	Gold flowering 2	42.058
	CRR073317	Gold flowering 3	32.944
	CRR073318	Tawny withering 1	64.413
	CRR073319	Tawny withering 2	55.340
	CRR073320	Tawny withering 3	66.729