Detail information of GWHGAAZE008832


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010243830.10PREDICTED: cyclin-dependent kinase C-2-like [Nelumbo nucifera]
Swissprottr|Q9LFT8|CDKC1_ARATH0Cyclin-dependent kinase C-1
trEMBLtr|W9RY23|W9RY23_9ROSA0Cyclin-dependent kinase C-1 {ECO:0000313|EMBL:EXB97693.1}
TAIR10AT5G10270.11E-168cyclin-dependent kinase C;1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene9404390794051006-
GWHAAZE00000002mRNA9404390794051006-
GWHAAZE00000002exon9405081794051006-
GWHAAZE00000002exon9404845894048539-
GWHAAZE00000002exon9404819794048287-
GWHAAZE00000002exon9404805294048085-
GWHAAZE00000002exon9404699194047109-
GWHAAZE00000002exon9404639394046513-
GWHAAZE00000002exon9404611294046229-
GWHAAZE00000002exon9404565694045921-
GWHAAZE00000002exon9404390794044447-
GWHAAZE00000002five_prime_UTR9405092794051006-
GWHAAZE00000002CDS9405081794050926-
GWHAAZE00000002CDS9404845894048539-
GWHAAZE00000002CDS9404819794048287-
GWHAAZE00000002CDS9404805294048085-
GWHAAZE00000002CDS9404699194047109-
GWHAAZE00000002CDS9404639394046513-
GWHAAZE00000002CDS9404611294046229-
GWHAAZE00000002CDS9404565694045921-
GWHAAZE00000002CDS9404390794044447-
Transcript Sequence

Network for GWHGAAZE008832

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00069.26Pkinase251331.50E-18
PF00069.26Pkinase1473001.90E-32
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyCMGC_CDK-CRK7-CDK9

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0005524molecular_functionATP binding
GO:0004672molecular_functionprotein kinase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.824
SRR3591706second leaf8.332
SRR3591707mature leaf6.967
SRR3591708Shoot apex10.334
SRR3591709Stem16.044
SRR3591710White floral bud15.004
SRR3591711White flower17.479
SRR3591712Green floral bud12.717
SRR3591713Yellow flower13.373
SRP173429 SRR8316895Juvenile bud stage 13.778
SRR8316896Juvenile bud stage 14.408
SRR8316897Juvenile bud stage 2.600
SRR8316894Third green stage 6.817
SRR8316900Third green stage 17.321
SRR8316901Third green stage 23.219
SRR8316898Complete white stage 11.639
SRR8316899Complete white stage 22.344
SRR8316903Complete white stage 15.378
SRR8316902Silver flowering stage8.442
SRR8316904Silver flowering stage12.135
SRR8316905Silver flowering stage6.420
SRR8316906Gold flowering stage 23.911
SRR8316907Gold flowering stage 22.910
SRR8316908Gold flowering stage 8.702
SRP132670SRR6706286Control20.307
SRR6706287Light intensity 50%24.394
SRR6706288Light intensity 20%23.738
CNP0000432CNS0095592Slightly white alabastrum(diploid) 122.219
CNS0095593Slightly white alabastrum(diploid) 224.856
CNS0095594Slightly white alabastrum(diploid) 321.691
CNS0095595Whole white alabastrum(diploid) 217.755
CNS0095596Whole white alabastrum(diploid) 317.348
CNS0095597Whole white alabastrum(diploid) 417.410
CNS0095598Silvery flower (diploied) 122.557
CNS0095599Silvery flower (diploied) 224.196
CNS0095600Silvery flower (diploied) 321.037
CNS0095601Golden flower (diploid) 118.980
CNS0095602Golden flower (diploid) 220.447
CNS0095603Golden flower (diploid) 318.756
CNS0095604Slightly white alabastrum(tetraploid) 123.617
CNS0095605Slightly white alabastrum(tetraploid) 224.029
CNS0095606Slightly white alabastrum(tetraploid) 332.230
CNS0095607Whole white alabastrum(tetraploid) 116.435
CNS0095608Whole white alabastrum(tetraploid) 213.990
CNS0095609Whole white alabastrum(tetraploid) 323.984
CNS0095610Silvery flower (tetraploid) 127.441
CNS0095611Silvery flower (tetraploid) 222.805
CNS0095612Silvery flower (tetraploid) 329.314
CNS0095613Golden flower (tetraploid) 123.323
CNS0095614Golden flower (tetraploid) 225.353
CNS0095615Golden flower (tetraploid) 317.050
CRA001975CRR073297Stem 115.597
CRR073298Stem 212.992
CRR073299Stem 312.880
CRR073300Leaf 119.586
CRR073301Leaf 215.627
CRR073302Leaf 311.938
CRR073303Juvenile bud 117.406
CRR073304Juvenile bud 216.148
CRR073305Juvenile bud 313.309
CRR073306Third green 112.090
CRR073307Third green 212.459
CRR073308Third green 39.014
CRR073309Second white 116.992
CRR073310Second white 213.406
CRR073311Second white 310.681
CRR073312Silver flowering 110.779
CRR073313Silver flowering 27.899
CRR073314Silver flowering 37.495
CRR073315Gold flowering 16.750
CRR073316Gold flowering 28.513
CRR073317Gold flowering 33.422
CRR073318Tawny withering 113.535
CRR073319Tawny withering 210.335
CRR073320Tawny withering 311.290