Gene detail

Detail information of GWHGAAZE008831

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007015404.1	1.0627E-150	20S proteasome alpha subunit G1 [Theobroma cacao]
Swissprot	tr\|O23715\|PSA3_ARATH	2E-146	Proteasome subunit alpha type-3
trEMBL	tr\|A0A061GUC3\|A0A061GUC3_THECC	4E-151	Proteasome subunit alpha type {ECO:0000256\|RuleBase:RU000551}
TAIR10	AT2G27020.1	4E-108	20S proteasome alpha subunit G1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	94030802	94040630	+
GWHAAZE00000002	mRNA	94030802	94040630	+
GWHAAZE00000002	exon	94030802	94030905	+
GWHAAZE00000002	exon	94031013	94031052	+
GWHAAZE00000002	exon	94031140	94031223	+
GWHAAZE00000002	exon	94033486	94033559	+
GWHAAZE00000002	exon	94036224	94036310	+
GWHAAZE00000002	exon	94036464	94036503	+
GWHAAZE00000002	exon	94036637	94036683	+
GWHAAZE00000002	exon	94037714	94037779	+
GWHAAZE00000002	exon	94039405	94039528	+
GWHAAZE00000002	exon	94040559	94040630	+
GWHAAZE00000002	CDS	94030802	94030905	+
GWHAAZE00000002	CDS	94031013	94031052	+
GWHAAZE00000002	CDS	94031140	94031223	+
GWHAAZE00000002	CDS	94033486	94033559	+
GWHAAZE00000002	CDS	94036224	94036310	+
GWHAAZE00000002	CDS	94036464	94036503	+
GWHAAZE00000002	CDS	94036637	94036683	+
GWHAAZE00000002	CDS	94037714	94037779	+
GWHAAZE00000002	CDS	94039405	94039528	+
GWHAAZE00000002	CDS	94040559	94040630	+

Transcript Sequence
>GWHTAAZE008841 ATGGCGAGCATAGGAACAGGCTACGATCTATCAGTTACTACTTTCTCTCCCGATGGCCGTGTATTTCAAATTGAATACGCCGCTAAAGCCGTCGACAACAGTGGGACTGTTGTTGGTATTAGATGCAAGGATGGAATTGTTATGGGCGTGGAGAAGCTCATAACATCTAAGATGATGCTGCCTGGATCTAATCGCAGGATCCACTCCGTACATCGTCACTCTGGCATGGCTGTTGCTGGACTAGCAGCAGATGGGAGACAAATTGTTGCGCGCGCAAAGGCCGAAGCTACAAATTACGAAAGTACTTATGGTGAACCCATTCCTGTAAAGGAACTTACTGAACGTGTTGCAAGTTATGTGCATCTATGCACACTATATTGGTGGCTCAGGGCGCAACTATACATGATCGAACCTTCTGGTATTTCATATAGATACTTAGGCGCTGCAATTGGAAAAGGAAAGCAGGCTGCTAAAACGGAAATTGAAAAGCTGAAGCTTTCTGAAATGACCTGCAGGGAAGGGGTTATTGAAGTAGCGAAGATCATCTATAGGGTACATGATGAGGCAAAGGACAAGGCCTTCGTGGAGATGAGCTGGGTTTGTGATGAGTCAAAGCGTCAGCATGTAAAGGTAATCTTCTCCAACCTTTTAGCCACAGTATGCTCGGTACCAGAGGATCTTTTGTCGGAGGCAAAGGCTGCTGCTAGGACTGCACTAGAGGAAATGGATGCTGACTAA

Network for GWHGAAZE008831

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10584.10	Proteasome_A_N	8	30	1.30E-13
PF00227.27	Proteasome	32	192	2.00E-36

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02727	PSMA3	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0051603	biological_process	proteolysis involved in cellular protein catabolic process
GO:0019773	cellular_component	proteasome core complex, alpha-subunit complex
GO:0005839	cellular_component	proteasome core complex
GO:0004175	molecular_function	endopeptidase activity
GO:0004298	molecular_function	threonine-type endopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	54.494
	SRR3591706	second leaf	25.720
	SRR3591707	mature leaf	6.495
	SRR3591708	Shoot apex	43.659
	SRR3591709	Stem	18.155
	SRR3591710	White floral bud	39.568
	SRR3591711	White flower	38.683
	SRR3591712	Green floral bud	33.670
	SRR3591713	Yellow flower	42.903
SRP173429	SRR8316895	Juvenile bud stage	7.029
	SRR8316896	Juvenile bud stage	18.846
	SRR8316897	Juvenile bud stage	9.464
	SRR8316894	Third green stage	6.184
	SRR8316900	Third green stage	28.475
	SRR8316901	Third green stage	35.251
	SRR8316898	Complete white stage	7.896
	SRR8316899	Complete white stage	44.653
	SRR8316903	Complete white stage	18.187
	SRR8316902	Silver flowering stage	17.253
	SRR8316904	Silver flowering stage	18.740
	SRR8316905	Silver flowering stage	2.876
	SRR8316906	Gold flowering stage	49.299
	SRR8316907	Gold flowering stage	51.246
	SRR8316908	Gold flowering stage	40.740
SRP132670	SRR6706286	Control	32.535
	SRR6706287	Light intensity 50%	32.862
	SRR6706288	Light intensity 20%	33.045
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.557
	CNS0095593	Slightly white alabastrum(diploid) 2	21.071
	CNS0095594	Slightly white alabastrum(diploid) 3	26.999
	CNS0095595	Whole white alabastrum(diploid) 2	26.435
	CNS0095596	Whole white alabastrum(diploid) 3	24.148
	CNS0095597	Whole white alabastrum(diploid) 4	21.738
	CNS0095598	Silvery flower (diploied) 1	17.245
	CNS0095599	Silvery flower (diploied) 2	17.559
	CNS0095600	Silvery flower (diploied) 3	30.941
	CNS0095601	Golden flower (diploid) 1	20.262
	CNS0095602	Golden flower (diploid) 2	25.228
	CNS0095603	Golden flower (diploid) 3	27.051
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.433
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.935
	CNS0095606	Slightly white alabastrum(tetraploid) 3	44.144
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.091
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.102
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.160
	CNS0095610	Silvery flower (tetraploid) 1	40.403
	CNS0095611	Silvery flower (tetraploid) 2	41.341
	CNS0095612	Silvery flower (tetraploid) 3	30.104
	CNS0095613	Golden flower (tetraploid) 1	43.647
	CNS0095614	Golden flower (tetraploid) 2	34.770
	CNS0095615	Golden flower (tetraploid) 3	34.249
CRA001975	CRR073297	Stem 1	22.346
	CRR073298	Stem 2	28.279
	CRR073299	Stem 3	31.967
	CRR073300	Leaf 1	35.156
	CRR073301	Leaf 2	47.632
	CRR073302	Leaf 3	47.259
	CRR073303	Juvenile bud 1	59.125
	CRR073304	Juvenile bud 2	63.974
	CRR073305	Juvenile bud 3	46.018
	CRR073306	Third green 1	30.477
	CRR073307	Third green 2	26.850
	CRR073308	Third green 3	28.846
	CRR073309	Second white 1	62.446
	CRR073310	Second white 2	45.575
	CRR073311	Second white 3	31.639
	CRR073312	Silver flowering 1	23.760
	CRR073313	Silver flowering 2	36.220
	CRR073314	Silver flowering 3	22.256
	CRR073315	Gold flowering 1	25.544
	CRR073316	Gold flowering 2	29.992
	CRR073317	Gold flowering 3	22.124
	CRR073318	Tawny withering 1	50.135
	CRR073319	Tawny withering 2	27.878
	CRR073320	Tawny withering 3	43.349