Gene detail

Detail information of GWHGAAZE008829

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004252874.1	7.16597E-94	PREDICTED: uncharacterized protein LOC101251866 isoform X1 [Solanum lycopersicum]
trEMBL	tr\|K4DI15\|K4DI15_SOLLC	3E-94	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc12g099940.1.1}
TAIR10	AT2G06025.1	1E-43	Acyl-CoA N-acyltransferases (NAT) superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	93916617	93925869	-
GWHAAZE00000002	mRNA	93916617	93925869	-
GWHAAZE00000002	exon	93925754	93925869	-
GWHAAZE00000002	exon	93923079	93923301	-
GWHAAZE00000002	exon	93922908	93922960	-
GWHAAZE00000002	exon	93922718	93922754	-
GWHAAZE00000002	exon	93921814	93921885	-
GWHAAZE00000002	exon	93920889	93920993	-
GWHAAZE00000002	exon	93918824	93918937	-
GWHAAZE00000002	exon	93918555	93918654	-
GWHAAZE00000002	exon	93916950	93916972	-
GWHAAZE00000002	exon	93916617	93916817	-
GWHAAZE00000002	CDS	93925754	93925869	-
GWHAAZE00000002	CDS	93923079	93923301	-
GWHAAZE00000002	CDS	93922908	93922960	-
GWHAAZE00000002	CDS	93922718	93922754	-
GWHAAZE00000002	CDS	93921814	93921885	-
GWHAAZE00000002	CDS	93920889	93920993	-
GWHAAZE00000002	CDS	93918824	93918937	-
GWHAAZE00000002	CDS	93918555	93918654	-
GWHAAZE00000002	CDS	93916950	93916972	-
GWHAAZE00000002	CDS	93916617	93916817	-

Transcript Sequence
>GWHTAAZE008839 ATGGAGAAATTACGGAGTGAATTTTTACCTCAATTGGAAGTTCGGCAATTGCAGATACCGGTGATTTCACGGTTAATCTCCCGGCGAAATTGTTTTCATGTGGTCAGCCTTTTCAGGGAGACGTTTCCTGTTTCACACTGTAGACGGAAAACTCTTGAAGTCCACTGCGATAATAGCCAAAGTATCCATCACTCGACTGTTTCTAAGAATGATAGCTCAAAGCAGCCTGAACTATCTTTTGACCGACTACAGCCCACCGACCAAGAGTATCTCGGACTGCAAAAGAGAAACTTTGGCCGTTTTGTTGCCCGTGAAGCTGTGCTAGATGAAGAGTATTGGACAGCAGCTTGGCTGCGAGCAGAAGCTCATTGGGAATCTGTATCATATATGCGGCATATTGACAGATGTAAAAGGAAGTATGCCGAACAGGAGTTTTATGCTTTGAAGCGGCGGTGTGTTGGGCAGGATGGAAATTCACTGAAGTGTTTCTGTTTTGTTGCTGTGAAGAAGGAAGACAAAAATATAAGAAGATCGGTCCTGAACAGTGTTGTGGGAACTTTGGACCTAAGCATACGACAATTTATACAAGGGGAAACATACCCAAGGATTAGTAGTGGTGAATGCGTGTATATCTATACAATGACAAATGCATTTTTAATCTTGTGGTTGGTGATGGATGGTGAAGGAGGTTATATCACTCTAGTATTGGCAGGAAAGTGGGACTTCTCCACTCATCACCCAATATCTGCACATGGCATGGACAAGCGCATTATGTTCAGAGTTTGGTTTGTTGGGCTGTCAAGGAGGCAGTTGAAAGGAGTTCAGCTCCACAAGTTGAAGCAGGTGGCGGAGAGACGGTCTGCTGTTTTGGCAAGTCAAGAGCCATTTGATGCACACAAGTATGCTTACATTGCAAATGTCTGTGTTTCAAAGTTTGCTCGACGTCAGGGAATTGCTTCAAACATGCTGCATTTGGCTTCTGATGTGGCCATTTCAACAGGTGCCGTGTTTCAACCACCACTTTTGTTAATCAATTTTGGTTAA

Network for GWHGAAZE008829

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.357
	SRR3591706	second leaf	9.305
	SRR3591707	mature leaf	12.675
	SRR3591708	Shoot apex	8.573
	SRR3591709	Stem	18.292
	SRR3591710	White floral bud	22.795
	SRR3591711	White flower	33.353
	SRR3591712	Green floral bud	7.967
	SRR3591713	Yellow flower	39.246
SRP173429	SRR8316895	Juvenile bud stage	5.109
	SRR8316896	Juvenile bud stage	7.278
	SRR8316897	Juvenile bud stage	3.932
	SRR8316894	Third green stage	3.979
	SRR8316900	Third green stage	8.061
	SRR8316901	Third green stage	6.740
	SRR8316898	Complete white stage	16.497
	SRR8316899	Complete white stage	12.581
	SRR8316903	Complete white stage	26.836
	SRR8316902	Silver flowering stage	21.028
	SRR8316904	Silver flowering stage	40.391
	SRR8316905	Silver flowering stage	19.649
	SRR8316906	Gold flowering stage	43.838
	SRR8316907	Gold flowering stage	40.904
	SRR8316908	Gold flowering stage	35.750
SRP132670	SRR6706286	Control	17.030
	SRR6706287	Light intensity 50%	18.160
	SRR6706288	Light intensity 20%	15.989
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.738
	CNS0095593	Slightly white alabastrum(diploid) 2	4.417
	CNS0095594	Slightly white alabastrum(diploid) 3	4.169
	CNS0095595	Whole white alabastrum(diploid) 2	3.522
	CNS0095596	Whole white alabastrum(diploid) 3	2.738
	CNS0095597	Whole white alabastrum(diploid) 4	4.374
	CNS0095598	Silvery flower (diploied) 1	12.804
	CNS0095599	Silvery flower (diploied) 2	11.080
	CNS0095600	Silvery flower (diploied) 3	40.406
	CNS0095601	Golden flower (diploid) 1	13.416
	CNS0095602	Golden flower (diploid) 2	31.030
	CNS0095603	Golden flower (diploid) 3	31.044
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.717
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.161
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.706
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.069
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.701
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.016
	CNS0095610	Silvery flower (tetraploid) 1	42.878
	CNS0095611	Silvery flower (tetraploid) 2	42.781
	CNS0095612	Silvery flower (tetraploid) 3	43.866
	CNS0095613	Golden flower (tetraploid) 1	30.918
	CNS0095614	Golden flower (tetraploid) 2	29.100
	CNS0095615	Golden flower (tetraploid) 3	74.091
CRA001975	CRR073297	Stem 1	17.183
	CRR073298	Stem 2	15.053
	CRR073299	Stem 3	9.766
	CRR073300	Leaf 1	20.153
	CRR073301	Leaf 2	15.432
	CRR073302	Leaf 3	8.409
	CRR073303	Juvenile bud 1	12.857
	CRR073304	Juvenile bud 2	24.642
	CRR073305	Juvenile bud 3	11.374
	CRR073306	Third green 1	22.023
	CRR073307	Third green 2	29.431
	CRR073308	Third green 3	22.823
	CRR073309	Second white 1	17.807
	CRR073310	Second white 2	29.326
	CRR073311	Second white 3	21.509
	CRR073312	Silver flowering 1	19.719
	CRR073313	Silver flowering 2	16.535
	CRR073314	Silver flowering 3	12.655
	CRR073315	Gold flowering 1	17.880
	CRR073316	Gold flowering 2	25.075
	CRR073317	Gold flowering 3	11.915
	CRR073318	Tawny withering 1	17.563
	CRR073319	Tawny withering 2	14.203
	CRR073320	Tawny withering 3	16.415