Detail information of GWHGAAZE008825


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002270683.11.1731E-135PREDICTED: SNF1-related protein kinase regulatory subunit beta-1 [Vitis vinifera]
Swissprottr|Q84VQ1|KINB1_ARATH8E-115SNF1-related protein kinase regulatory subunit beta-1
trEMBLtr|D7T1F1|D7T1F1_VITVI4E-136Putative uncharacterized protein {ECO:0000313|EMBL:CBI24331.3}
TAIR10AT5G21170.13E-915'-AMP-activated protein kinase beta-2 subunit protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene9367747893683368+
GWHAAZE00000002mRNA9367747893683368+
GWHAAZE00000002exon9367747893677573+
GWHAAZE00000002exon9368147393681651+
GWHAAZE00000002exon9368206493682226+
GWHAAZE00000002exon9368303993683368+
GWHAAZE00000002CDS9367747893677573+
GWHAAZE00000002CDS9368147393681651+
GWHAAZE00000002CDS9368206493682226+
GWHAAZE00000002CDS9368303993683368+
Transcript Sequence

Network for GWHGAAZE008825

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16561.6AMPK1_CBM671471.20E-30
PF04739.16AMPKBI1802522.70E-22
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07199PRKAB Apelin signaling pathway map04371
FoxO signaling pathwaymap04068
AMPK signaling pathwaymap04152
Tight junctionmap04530
Insulin signaling pathwaymap04910
Glucagon signaling pathwaymap04922
Adipocytokine signaling pathwaymap04920
Oxytocin signaling pathwaymap04921
Longevity regulating pathwaymap04211
Longevity regulating pathway - multiple speciesmap04213
Circadian rhythmmap04710
Thermogenesismap04714

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf69.513
SRR3591706second leaf4.936
SRR3591707mature leaf3.151
SRR3591708Shoot apex42.076
SRR3591709Stem57.759
SRR3591710White floral bud66.035
SRR3591711White flower68.096
SRR3591712Green floral bud12.476
SRR3591713Yellow flower210.411
SRP173429 SRR8316895Juvenile bud stage 11.712
SRR8316896Juvenile bud stage 14.781
SRR8316897Juvenile bud stage 6.899
SRR8316894Third green stage 6.067
SRR8316900Third green stage 12.237
SRR8316901Third green stage 13.928
SRR8316898Complete white stage 39.543
SRR8316899Complete white stage 19.438
SRR8316903Complete white stage 56.689
SRR8316902Silver flowering stage19.464
SRR8316904Silver flowering stage26.076
SRR8316905Silver flowering stage14.637
SRR8316906Gold flowering stage 74.014
SRR8316907Gold flowering stage 79.239
SRR8316908Gold flowering stage 43.903
SRP132670SRR6706286Control16.485
SRR6706287Light intensity 50%12.142
SRR6706288Light intensity 20%9.177
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.761
CNS0095593Slightly white alabastrum(diploid) 212.920
CNS0095594Slightly white alabastrum(diploid) 312.545
CNS0095595Whole white alabastrum(diploid) 213.204
CNS0095596Whole white alabastrum(diploid) 314.490
CNS0095597Whole white alabastrum(diploid) 49.333
CNS0095598Silvery flower (diploied) 149.154
CNS0095599Silvery flower (diploied) 229.059
CNS0095600Silvery flower (diploied) 381.218
CNS0095601Golden flower (diploid) 183.096
CNS0095602Golden flower (diploid) 2138.066
CNS0095603Golden flower (diploid) 3139.817
CNS0095604Slightly white alabastrum(tetraploid) 111.555
CNS0095605Slightly white alabastrum(tetraploid) 211.023
CNS0095606Slightly white alabastrum(tetraploid) 316.420
CNS0095607Whole white alabastrum(tetraploid) 18.105
CNS0095608Whole white alabastrum(tetraploid) 210.728
CNS0095609Whole white alabastrum(tetraploid) 311.505
CNS0095610Silvery flower (tetraploid) 165.007
CNS0095611Silvery flower (tetraploid) 2101.139
CNS0095612Silvery flower (tetraploid) 3167.833
CNS0095613Golden flower (tetraploid) 1115.708
CNS0095614Golden flower (tetraploid) 295.343
CNS0095615Golden flower (tetraploid) 3417.449
CRA001975CRR073297Stem 146.941
CRR073298Stem 236.701
CRR073299Stem 352.735
CRR073300Leaf 121.511
CRR073301Leaf 221.118
CRR073302Leaf 317.688
CRR073303Juvenile bud 115.473
CRR073304Juvenile bud 216.911
CRR073305Juvenile bud 327.982
CRR073306Third green 173.268
CRR073307Third green 287.400
CRR073308Third green 365.682
CRR073309Second white 188.005
CRR073310Second white 260.871
CRR073311Second white 371.211
CRR073312Silver flowering 1122.329
CRR073313Silver flowering 2136.210
CRR073314Silver flowering 3122.337
CRR073315Gold flowering 14.248
CRR073316Gold flowering 24.153
CRR073317Gold flowering 35.007
CRR073318Tawny withering 147.203
CRR073319Tawny withering 219.690
CRR073320Tawny withering 343.999