Detail information of GWHGAAZE008821


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCBI24384.34.0173E-115unnamed protein product [Vitis vinifera]
Swissprottr|O80678|UBA2B_ARATH8E-109UBP1-associated protein 2B
trEMBLtr|A5B1I9|A5B1I9_VITVI3E-114Putative uncharacterized protein {ECO:0000313|EMBL:CAN80681.1}
TAIR10AT3G56860.53E-76UBP1-associated protein 2A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene9358219693583547+
GWHAAZE00000002mRNA9358219693583547+
GWHAAZE00000002exon9358219693583082+
GWHAAZE00000002exon9358324493583547+
GWHAAZE00000002CDS9358219693583082+
GWHAAZE00000002CDS9358324493583547+
Transcript Sequence

Network for GWHGAAZE008821

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.23RRM_11352001.10E-13
PF00076.23RRM_12312951.50E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12741HNRNPA1_3 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf35.231
SRR3591706second leaf37.027
SRR3591707mature leaf38.992
SRR3591708Shoot apex47.598
SRR3591709Stem32.380
SRR3591710White floral bud34.651
SRR3591711White flower41.722
SRR3591712Green floral bud25.578
SRR3591713Yellow flower35.290
SRP173429 SRR8316895Juvenile bud stage 51.827
SRR8316896Juvenile bud stage 55.588
SRR8316897Juvenile bud stage 31.424
SRR8316894Third green stage 25.933
SRR8316900Third green stage 57.836
SRR8316901Third green stage 54.891
SRR8316898Complete white stage 20.268
SRR8316899Complete white stage 68.093
SRR8316903Complete white stage 56.369
SRR8316902Silver flowering stage30.498
SRR8316904Silver flowering stage49.436
SRR8316905Silver flowering stage28.293
SRR8316906Gold flowering stage 66.981
SRR8316907Gold flowering stage 60.165
SRR8316908Gold flowering stage 65.865
SRP132670SRR6706286Control76.866
SRR6706287Light intensity 50%75.074
SRR6706288Light intensity 20%72.933
CNP0000432CNS0095592Slightly white alabastrum(diploid) 145.154
CNS0095593Slightly white alabastrum(diploid) 238.411
CNS0095594Slightly white alabastrum(diploid) 340.577
CNS0095595Whole white alabastrum(diploid) 231.413
CNS0095596Whole white alabastrum(diploid) 326.327
CNS0095597Whole white alabastrum(diploid) 427.425
CNS0095598Silvery flower (diploied) 151.876
CNS0095599Silvery flower (diploied) 245.699
CNS0095600Silvery flower (diploied) 371.731
CNS0095601Golden flower (diploid) 155.216
CNS0095602Golden flower (diploid) 281.475
CNS0095603Golden flower (diploid) 381.385
CNS0095604Slightly white alabastrum(tetraploid) 142.857
CNS0095605Slightly white alabastrum(tetraploid) 233.698
CNS0095606Slightly white alabastrum(tetraploid) 397.911
CNS0095607Whole white alabastrum(tetraploid) 126.446
CNS0095608Whole white alabastrum(tetraploid) 216.347
CNS0095609Whole white alabastrum(tetraploid) 364.367
CNS0095610Silvery flower (tetraploid) 182.742
CNS0095611Silvery flower (tetraploid) 267.384
CNS0095612Silvery flower (tetraploid) 375.457
CNS0095613Golden flower (tetraploid) 135.653
CNS0095614Golden flower (tetraploid) 260.488
CNS0095615Golden flower (tetraploid) 352.561
CRA001975CRR073297Stem 1134.212
CRR073298Stem 2134.066
CRR073299Stem 3118.989
CRR073300Leaf 1123.730
CRR073301Leaf 2119.050
CRR073302Leaf 388.267
CRR073303Juvenile bud 180.193
CRR073304Juvenile bud 272.026
CRR073305Juvenile bud 3107.267
CRR073306Third green 197.870
CRR073307Third green 267.008
CRR073308Third green 382.039
CRR073309Second white 159.742
CRR073310Second white 281.081
CRR073311Second white 374.982
CRR073312Silver flowering 181.559
CRR073313Silver flowering 281.278
CRR073314Silver flowering 384.549
CRR073315Gold flowering 158.776
CRR073316Gold flowering 279.430
CRR073317Gold flowering 356.892
CRR073318Tawny withering 187.678
CRR073319Tawny withering 255.063
CRR073320Tawny withering 379.727