Detail information of GWHGAAZE008815


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006465785.13.89085E-57PREDICTED: GPI mannosyltransferase 1-like isoform X3 [Citrus sinensis]
Swissprottr|Q500W7|PIGM_ARATH9E-54GPI mannosyltransferase 1
trEMBLtr|V4T2R4|V4T2R4_9ROSI3E-57Uncharacterized protein {ECO:0000313|EMBL:ESR45640.1}
TAIR10AT5G22130.12E-45mannosyltransferase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene9333788893342415-
GWHAAZE00000002mRNA9333788893342415-
GWHAAZE00000002exon9334224893342415-
GWHAAZE00000002exon9333788893338178-
GWHAAZE00000002CDS9334224893342415-
GWHAAZE00000002CDS9333801193338178-
GWHAAZE00000002three_prime_UTR9333788893338010-
Transcript Sequence

Network for GWHGAAZE008815

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0040GO:0008097 5S rRNA binding GOslim:molecular_function
map03040 Spliceosome
GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity GOslim:molecular_function


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05007.14Mannosyl_trans11111.50E-28
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05284PIGM Metabolic pathways map01100
Glycosylphosphatidylinositolmap00563

Gene Ontology

GO term OntologyName
GO:0006506biological_processGPI anchor biosynthetic process
GO:0016021cellular_componentintegral component of membrane
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.084
SRR3591708Shoot apex0.000
SRR3591709Stem0.000
SRR3591710White floral bud0.060
SRR3591711White flower0.000
SRR3591712Green floral bud0.237
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 2.570
SRR8316896Juvenile bud stage 2.843
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 1.066
SRR8316900Third green stage 2.890
SRR8316901Third green stage 2.600
SRR8316898Complete white stage 2.030
SRR8316899Complete white stage 4.573
SRR8316903Complete white stage 2.802
SRR8316902Silver flowering stage1.859
SRR8316904Silver flowering stage4.250
SRR8316905Silver flowering stage1.171
SRR8316906Gold flowering stage 3.555
SRR8316907Gold flowering stage 7.098
SRR8316908Gold flowering stage 0.999
SRP132670SRR6706286Control0.851
SRR6706287Light intensity 50%1.666
SRR6706288Light intensity 20%1.600
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.883
CNS0095593Slightly white alabastrum(diploid) 23.886
CNS0095594Slightly white alabastrum(diploid) 32.811
CNS0095595Whole white alabastrum(diploid) 24.977
CNS0095596Whole white alabastrum(diploid) 31.889
CNS0095597Whole white alabastrum(diploid) 42.494
CNS0095598Silvery flower (diploied) 13.902
CNS0095599Silvery flower (diploied) 23.678
CNS0095600Silvery flower (diploied) 31.195
CNS0095601Golden flower (diploid) 12.660
CNS0095602Golden flower (diploid) 22.467
CNS0095603Golden flower (diploid) 31.434
CNS0095604Slightly white alabastrum(tetraploid) 10.000
CNS0095605Slightly white alabastrum(tetraploid) 20.000
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.000
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 12.039
CRR073298Stem 21.701
CRR073299Stem 30.367
CRR073300Leaf 12.022
CRR073301Leaf 21.286
CRR073302Leaf 30.358
CRR073303Juvenile bud 10.531
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.139
CRR073306Third green 10.260
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.488
CRR073310Second white 20.000
CRR073311Second white 30.143
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.611
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.134
CRR073319Tawny withering 21.050
CRR073320Tawny withering 31.139