Gene detail

Detail information of GWHGAAZE008811

Functional Annotation

Database	Orthologs	Annotation
Nr	CAN67610.1	hypothetical protein VITISV_007077 [Vitis vinifera]
Swissprot	tr\|Q0WR59\|Y5020_ARATH	Probable inactive receptor kinase At5g10020 (Precursor)
trEMBL	tr\|A5B7J2\|A5B7J2_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN67610.1}
TAIR10	AT2G27060.1	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	93091988	93105691	-
GWHAAZE00000002	mRNA	93091988	93105691	-
GWHAAZE00000002	exon	93091988	93092697	-
GWHAAZE00000002	exon	93099093	93100589	-
GWHAAZE00000002	exon	93104788	93105691	-
GWHAAZE00000002	CDS	93104788	93105691	-
GWHAAZE00000002	CDS	93099093	93100589	-
GWHAAZE00000002	CDS	93092108	93092697	-
GWHAAZE00000002	three_prime_UTR	93091988	93092107	-

Transcript Sequence
>GWHTAAZE008821 ATGCAGTCCATCTGTTTGTTAATATTACTGTTGGTAGAATGGGCAATAGGAAAGTCAGACTTGGATGTACTTTTGGAGCTAAAAAGAGGAATTGAGAAAGACCCATCTGGCAAAGTTCTTGATTCATGGAATTCTGGGTCCAGTGCAGCTAATGGGTGCCCCCAAGATTGGTATGGTATTAGTTGTAGTGCCGGCCGTGTGACATCAATTATGCTAGATGATTTAGGTCTGTATGGAAAATTTGATTTCGCTTCTGTTGCCGGGCTTAACATGCTTCGCAATTTGTCATTATCTAACTCCCATTTGATGGGTACTATTGATGAATCGGTTGTCTCGTTTGTATCACTAGAATATTTGGATCTTTCTCGCAATATGTTTGTTGGGTCACTACCCTCTCAGTTAACAAATTTGAAGAATCTGGTGCTTTTGAATCTTTCGTCGAACAGCTTTGAAGGCACAATTCCCACCGGTTTTGAAAATCTTGTAAAGTTAATGTATCTGGATTTACACTTGAATAGTTTTTCTGGGAATGTTATGGGTCTTTTGATGCAATTGGGTGGTGTGGTTTATATAGACCTTAGCTGCAATGGATTTTCGGGGTCCCTTGACTTGGGATTGGGACAGTCCAGTTTCATTTCTGCAATTCGGTATTTAAATATTAGCTACAATAACTTGACCGGAGAACTCTTCTCTCATGATGGAATACCGTATTTCGACAATTTAGAGGCATTTGATGCAAGTAATAATCAGTTTGTGGGCAATGTTCCTTCTTTCAATTTTATAGTTTCCCTGCGGATTCTTATGCTTGGAACCAACCAGTTATCAGGGTCCCTACCTGAAGCTCTTCTGCAAGAGAGCTCAATGGTCTTGTCCCAGTTAGATCTCAGCCTTAATCGGCTTGAAGGTCCAGTAGGAAGTATCACCTCTGCAACTCTGAAGAATCTTAACCTATCATCTAACAATTTATCAGGCCCCTTGCCTTTGATGATTGGACACTGTGCCATCGTAGATCTAAGTAATAATATGCTCTCAGGGGACTTATCTCGAATTCAGGGTTGGGGGAACTATGTAGAAATTATCGATTTAAGTTCAAACTCATTGACTGGAGCCTTGCCAAACCAAACTTCTCAATTCTTGAGGCTTACTTCAATCAAGATTTCGAAGAACTTATTAGAGGGTTCCCTCCCACCCGTGTTGGGCACGTACCCAGAACTCAAAATTATTGATTTTAGCCACAACAAGCTTAAGGATGCCCTACTTCCTGCCCTTTTCAACTCCACAAGATTGACTGCCATCAACCTCTCATTCAACAACTTCACTGGAACCATACCTGTTCAAGCATCCGATAGCCCTTTTGCGGACCCCACCAAGAATTTGAGCCTCGTGTATCTTGATTTGTCCTATAATTCGCTTATGGGTCATTTGCCCTCAGAGATTGGTACATTCTACAACATGTTGTTTCTCAATTTATCTAACAACCATTTTGAAGGTGGGATACCAGATGATCTCCCACACGAGCTGAAAGGATTTAATGTATCTTACAATAATCTATCTGGAGTTGTACCGGAAAACTTGAGGACATTTCCCGATTCGGCATTCCATCCAGGAAATTCCCTATTGATTTTCCCTTATTCAGGACCCTCACCAGAAGTTGGTCCAAACATGAATTTGAGGCATAGGTCCCATATGAAGTCTGTTGTAAGGGCTGCCATTATCGCAGGTTTGGTAGGTGGTGCGTTTTTTATAGCTCTATTGATATTGCTGATATACTATAGAGCTCAAAGACAGGAACGAACTAGGAACATTTCGAAGGAAACTAGTGAAAAGGGAGAGATGCAACAAGGTGCTTCTTCCCTTTCTGACACGTCAGCACTTAGTACCAATGTGAACCAGTCGTTAGCTTCCCTTAATCTTCCTCAAGAGCAAGTATCTTCATCACAAGTTGTACAGAGATTTAATACTGGCTCGCTGGAATCAATAAGAGAGAATGAAGGCACGTCTGATCAATCGCCTTCTAAGAGCCAACATGTATCTGAGAATCGTGGTTCACTAAAGGTTTGTTCGCCAGATAAACTAGCCGGGGATTTGCATCTTTTTGATAGCTCATTGCTGTTGAGTGCCGAAGAACTTTCGTGTGCACCAGCGGAAGTTATTGGGAGGAGTTGTCATGGAACACTGTATAAAGCTGTGCTTGGATCTGGTCAAGAATTTGCGGTGAAATGGTTGAAGGAAGGGATAGCGAAAGGCAAGAAGGAATTTGCAAGAGAAGTAAAGAAGCTTGGGAACATCAGACACCCAAATTTAGTTTCAATGAAGGGTTATTATTGGGGCCCGAAGGAACATGAGAAGCTTATACTGTCAAATTATATCAATGCACCATGTTTGGCTCTCTATCTCCAAGATACAGATCCAAAAAACCTCCCCCCTCTATCTCTCGATCAACGGCTCAAGATTGCCGTGGATGTGGCCCGTTGCCTAAACTACCTCCACAATGAGAAAGCCATACCTCACGGAAACCTGAAATCCTCAAACATCTTACTAGAAACTCCGGCCATGAATGCCCTCCTAACCGACTACAGCCTCCACCGGATTATGACATCAGCGGGTACATCTGACCAGGTCCTTAATGCCGGAGCCCTCGGTTACCGGCCACCTGAATTTGCCAGCACAAGTAAGCCTTGCCCGTCATTGAAGAGTGACGTTTATGCTTATGGGGTCATTTTGTTGGAGCTCTTGACCGGCAAAAGTGCGTCAGAGGTGGTTGTCGGTGGGACCCATGGAGCGGTTGAACTAACTGAGTGGGTCCATTTTTTAGCTGCTGAGAACCGTTCGATCGAGTGTTTTGACAGTCCAATGTTAAAAATGGAGGGTGGGCCGCCTAAAGGGCTCGATGATTTGCTTCAAGTGGCACTTAGGTGCATTTTACCAGCTTCTGAGAGACCCGATATGAGAACAATTTTCGAAGATCTTTCTTTGATAGTATTAGAATAAAATTTGTTGCCGCTATTGATTGTTTAGTTCAAATTCTTTCTAGTTTTTGGATTACTATTAGAACAAAATTTGTCGTTGCTATTGATTGTTTAATTCAAATTCTTTCTAGTTTTTGGATTA

Network for GWHGAAZE008811

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	18	63	1.20E-07
PF07714.18	PK_Tyr_Ser-Thr	716	917	1.40E-26

Protein Sequence

>GWHPAAZE008816
MQSICLLILLLVEWAIGKSDLDVLLELKRGIEKDPSGKVLDSWNSGSSAANGCPQDWYGISCSAGRVTSIMLDDLGLYGKFDFASVAGLNMLRNLSLSNSHLMGTIDESVVSFVSLEYLDLSRNMFVGSLPSQLTNLKNLVLLNLSSNSFEGTIPTGFENLVKLMYLDLHLNSFSGNVMGLLMQLGGVVYIDLSCNGFSGSLDLGLGQSSFISAIRYLNISYNNLTGELFSHDGIPYFDNLEAFDASNNQFVGNVPSFNFIVSLRILMLGTNQLSGSLPEALLQESSMVLSQLDLSLNRLEGPVGSITSATLKNLNLSSNNLSGPLPLMIGHCAIVDLSNNMLSGDLSRIQGWGNYVEIIDLSSNSLTGALPNQTSQFLRLTSIKISKNLLEGSLPPVLGTYPELKIIDFSHNKLKDALLPALFNSTRLTAINLSFNNFTGTIPVQASDSPFADPTKNLSLVYLDLSYNSLMGHLPSEIGTFYNMLFLNLSNNHFEGGIPDDLPHELKGFNVSYNNLSGVVPENLRTFPDSAFHPGNSLLIFPYSGPSPEVGPNMNLRHRSHMKSVVRAAIIAGLVGGAFFIALLILLIYYRAQRQERTRNISKETSEKGEMQQGASSLSDTSALSTNVNQSLASLNLPQEQVSSSQVVQRFNTGSLESIRENEGTSDQSPSKSQHVSENRGSLKVCSPDKLAGDLHLFDSSLLLSAEELSCAPAEVIGRSCHGTLYKAVLGSGQEFAVKWLKEGIAKGKKEFAREVKKLGNIRHPNLVSMKGYYWGPKEHEKLILSNYINAPCLALYLQDTDPKNLPPLSLDQRLKIAVDVARCLNYLHNEKAIPHGNLKSSNILLETPAMNALLTDYSLHRIMTSAGTSDQVLNAGALGYRPPEFASTSKPCPSLKSDVYAYGVILLELLTGKSASEVVVGGTHGAVELTEWVHFLAAENRSIECFDSPMLKMEGGPPKGLDDLLQVALRCILPASERPDMRTIFEDLSLIVLE

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.238
	SRR3591706	second leaf	5.784
	SRR3591707	mature leaf	3.630
	SRR3591708	Shoot apex	11.157
	SRR3591709	Stem	2.982
	SRR3591710	White floral bud	5.367
	SRR3591711	White flower	1.670
	SRR3591712	Green floral bud	9.241
	SRR3591713	Yellow flower	0.596
SRP173429	SRR8316895	Juvenile bud stage	4.718
	SRR8316896	Juvenile bud stage	5.471
	SRR8316897	Juvenile bud stage	2.426
	SRR8316894	Third green stage	3.047
	SRR8316900	Third green stage	5.484
	SRR8316901	Third green stage	5.724
	SRR8316898	Complete white stage	0.698
	SRR8316899	Complete white stage	4.290
	SRR8316903	Complete white stage	1.667
	SRR8316902	Silver flowering stage	0.325
	SRR8316904	Silver flowering stage	0.626
	SRR8316905	Silver flowering stage	0.141
	SRR8316906	Gold flowering stage	0.206
	SRR8316907	Gold flowering stage	0.394
	SRR8316908	Gold flowering stage	0.639
SRP132670	SRR6706286	Control	4.318
	SRR6706287	Light intensity 50%	5.126
	SRR6706288	Light intensity 20%	5.877
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.643
	CNS0095593	Slightly white alabastrum(diploid) 2	3.613
	CNS0095594	Slightly white alabastrum(diploid) 3	3.647
	CNS0095595	Whole white alabastrum(diploid) 2	4.387
	CNS0095596	Whole white alabastrum(diploid) 3	4.479
	CNS0095597	Whole white alabastrum(diploid) 4	3.728
	CNS0095598	Silvery flower (diploied) 1	3.036
	CNS0095599	Silvery flower (diploied) 2	2.492
	CNS0095600	Silvery flower (diploied) 3	1.743
	CNS0095601	Golden flower (diploid) 1	2.377
	CNS0095602	Golden flower (diploid) 2	1.892
	CNS0095603	Golden flower (diploid) 3	1.561
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.337
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.314
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.376
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.372
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.858
	CNS0095610	Silvery flower (tetraploid) 1	1.151
	CNS0095611	Silvery flower (tetraploid) 2	1.672
	CNS0095612	Silvery flower (tetraploid) 3	1.821
	CNS0095613	Golden flower (tetraploid) 1	0.492
	CNS0095614	Golden flower (tetraploid) 2	0.706
	CNS0095615	Golden flower (tetraploid) 3	0.262
CRA001975	CRR073297	Stem 1	10.854
	CRR073298	Stem 2	8.856
	CRR073299	Stem 3	6.322
	CRR073300	Leaf 1	10.327
	CRR073301	Leaf 2	8.914
	CRR073302	Leaf 3	6.557
	CRR073303	Juvenile bud 1	5.137
	CRR073304	Juvenile bud 2	6.377
	CRR073305	Juvenile bud 3	6.903
	CRR073306	Third green 1	1.512
	CRR073307	Third green 2	1.942
	CRR073308	Third green 3	2.348
	CRR073309	Second white 1	0.213
	CRR073310	Second white 2	0.391
	CRR073311	Second white 3	0.239
	CRR073312	Silver flowering 1	0.125
	CRR073313	Silver flowering 2	0.034
	CRR073314	Silver flowering 3	0.164
	CRR073315	Gold flowering 1	2.595
	CRR073316	Gold flowering 2	4.988
	CRR073317	Gold flowering 3	3.369
	CRR073318	Tawny withering 1	3.438
	CRR073319	Tawny withering 2	2.328
	CRR073320	Tawny withering 3	3.081