Gene detail

Detail information of GWHGAAZE008791

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010251642.1	1.2283E-152	PREDICTED: (+)-neomenthol dehydrogenase-like isoform X3 [Nelumbo nucifera]
Swissprot	tr\|Q9M2E2\|SDR1_ARATH	3E-90	(+)-neomenthol dehydrogenase
trEMBL	tr\|A0A022S036\|A0A022S036_ERYGU	6E-151	Uncharacterized protein {ECO:0000313\|EMBL:EYU46137.1}
TAIR10	AT3G61220.1	4E-74	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	92271406	92274533	-
GWHAAZE00000002	mRNA	92271406	92274533	-
GWHAAZE00000002	exon	92274453	92274533	-
GWHAAZE00000002	exon	92273159	92273414	-
GWHAAZE00000002	exon	92272688	92272765	-
GWHAAZE00000002	exon	92272392	92272577	-
GWHAAZE00000002	exon	92271406	92271783	-
GWHAAZE00000002	five_prime_UTR	92274485	92274533	-
GWHAAZE00000002	CDS	92274453	92274484	-
GWHAAZE00000002	CDS	92273159	92273414	-
GWHAAZE00000002	CDS	92272688	92272765	-
GWHAAZE00000002	CDS	92272392	92272577	-
GWHAAZE00000002	CDS	92271406	92271783	-

Transcript Sequence
>GWHTAAZE008801 TAGCAACATACTAAAGGAAGCCCAAATCAACCATCAAATCACAGCTGCAATGGCAATGAATGTGAAGCATTCAAATGAGAGGTATGCGGTGGTTACGGGAGCAAACAAGGGCATAGGCCTGGAGGTCGTCCGGCAGCTTGCGATTGCCGGAGTGAAGGTAGTTTTGACGGCGAGAGATGAGGGGAGGGGCATCGCTGCTGTACAATCTCTCTGTGGTGGCGATGGTTCTGGTTTGTCCAACAACGTACTCTTCCACCAGCTTGACGTACAAGACCCTGACAGCATTGAATTGATGGCCCAATTTATACGCACCAATTTTGGAAGGCTTGATATTTTGGTAAACAATGCTGGTGCTTCAGGGGTTATGGTTGATGAAGATGGGCTAAAAGCCCTCAATATAGATCCTTCCTCTTGGTTGTCAGGGAAGGCCACAGGCATGGTTCAAGGTGTGATAAAAACAACATATGAAAAGGCAAGAGAGTGCTTGGGCACCAATTATTATGGTGTCAAGAATGTCACAAAAGCGCTTCTTCCATTGCTAAATCTTTCTACTTCAGGAGGGAGGATTGTCAATGTTTCCTCCCTCAGAGGCGAATTAAGGCGAATTCCTAGTGAACAAACGAGGAAAGAACTCGAAGATATAGATGCCCTAACAGAAGAGAAGATCGATAAGCTAGTAGAGAAATTTATGCGTGATCTAAAAGCAGATGAGCTTGAAGCCAACGGATGGTCAAAAATGCTACCGGCTTACAGCGTATCGAAGGTGATGCTCAATGCGTACACTAGGGTTCTTGCAAGGGATAACCCTAAGATGCTTATAAATTGTGTGCACCCGGGGTTTGTGAATACGGATATTAATTGGCACACGGGGACCATGACAGTTGCAGAGGGAGCTGAAGGTCCAGTCATGTTGGCTCTTTTGCCCAATGGAGGTCTCACCGGACGCTATTTCGACCGTACAGAAGTGGCTGAGTTTTGA

Network for GWHGAAZE008791

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00106.26	adh_short	12	183	3.40E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15095	E1.1.1.208	Biosynthesis of secondary metabolites	map01110
K15095	E1.1.1.208	Monoterpenoid biosynthesis	map00902

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.468
	SRR3591706	second leaf	0.097
	SRR3591707	mature leaf	0.381
	SRR3591708	Shoot apex	1.956
	SRR3591709	Stem	1.351
	SRR3591710	White floral bud	2.446
	SRR3591711	White flower	2.170
	SRR3591712	Green floral bud	0.896
	SRR3591713	Yellow flower	0.596
SRP173429	SRR8316895	Juvenile bud stage	1.112
	SRR8316896	Juvenile bud stage	0.370
	SRR8316897	Juvenile bud stage	0.761
	SRR8316894	Third green stage	0.282
	SRR8316900	Third green stage	0.738
	SRR8316901	Third green stage	0.665
	SRR8316898	Complete white stage	0.150
	SRR8316899	Complete white stage	1.865
	SRR8316903	Complete white stage	0.250
	SRR8316902	Silver flowering stage	0.085
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.029
	SRR8316907	Gold flowering stage	0.238
	SRR8316908	Gold flowering stage	0.103
SRP132670	SRR6706286	Control	0.451
	SRR6706287	Light intensity 50%	0.576
	SRR6706288	Light intensity 20%	0.612
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.388
	CNS0095593	Slightly white alabastrum(diploid) 2	1.651
	CNS0095594	Slightly white alabastrum(diploid) 3	1.390
	CNS0095595	Whole white alabastrum(diploid) 2	1.502
	CNS0095596	Whole white alabastrum(diploid) 3	1.006
	CNS0095597	Whole white alabastrum(diploid) 4	1.929
	CNS0095598	Silvery flower (diploied) 1	1.781
	CNS0095599	Silvery flower (diploied) 2	1.678
	CNS0095600	Silvery flower (diploied) 3	1.477
	CNS0095601	Golden flower (diploid) 1	2.139
	CNS0095602	Golden flower (diploid) 2	1.770
	CNS0095603	Golden flower (diploid) 3	1.608
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.819
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.515
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.618
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.055
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.297
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.218
	CNS0095610	Silvery flower (tetraploid) 1	0.409
	CNS0095611	Silvery flower (tetraploid) 2	1.078
	CNS0095612	Silvery flower (tetraploid) 3	0.350
	CNS0095613	Golden flower (tetraploid) 1	0.189
	CNS0095614	Golden flower (tetraploid) 2	0.092
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.482
	CRR073298	Stem 2	0.291
	CRR073299	Stem 3	0.773
	CRR073300	Leaf 1	0.779
	CRR073301	Leaf 2	0.608
	CRR073302	Leaf 3	0.413
	CRR073303	Juvenile bud 1	0.440
	CRR073304	Juvenile bud 2	0.087
	CRR073305	Juvenile bud 3	0.417
	CRR073306	Third green 1	0.140
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.115
	CRR073309	Second white 1	0.280
	CRR073310	Second white 2	0.035
	CRR073311	Second white 3	0.060
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.047
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.520
	CRR073316	Gold flowering 2	0.468
	CRR073317	Gold flowering 3	0.307
	CRR073318	Tawny withering 1	11.315
	CRR073319	Tawny withering 2	8.979
	CRR073320	Tawny withering 3	11.483