Detail information of GWHGAAZE008784


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009606600.13.1702E-114PREDICTED: BTB/POZ and MATH domain-containing protein 4-like [Nicotiana tomentosiformis]
Swissprottr|Q9SRV1|BPM4_ARATH3E-95BTB/POZ and MATH domain-containing protein 4
trEMBLtr|A0A022S2K0|A0A022S2K0_ERYGU2E-114Uncharacterized protein {ECO:0000313|EMBL:EYU46143.1}
TAIR10AT3G03740.13E-71BTB-POZ and MATH domain 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene9167227891681418+
GWHAAZE00000002mRNA9167227891681418+
GWHAAZE00000002exon9167227891672490+
GWHAAZE00000002exon9167999091680335+
GWHAAZE00000002exon9168080491681418+
GWHAAZE00000002five_prime_UTR9167227891672485+
GWHAAZE00000002CDS9167248691672490+
GWHAAZE00000002CDS9167999091680335+
GWHAAZE00000002CDS9168080491681163+
GWHAAZE00000002three_prime_UTR9168116491681418+
Transcript Sequence

Network for GWHGAAZE008784

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00651.32BTB591775.50E-25
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyTRAF
Ubiquitin Family3-box

KEGG pathway

KO Enzyme pathway mapID
K10523SPOP Hedgehog signaling pathway map04340
Hedgehog signaling pathway - flymap04341

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE008784.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3010202.557.512.51517.522.52527.5Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.045
SRR3591706second leaf4.463
SRR3591707mature leaf5.672
SRR3591708Shoot apex9.734
SRR3591709Stem7.689
SRR3591710White floral bud10.839
SRR3591711White flower11.196
SRR3591712Green floral bud9.544
SRR3591713Yellow flower10.343
SRP173429 SRR8316895Juvenile bud stage 5.087
SRR8316896Juvenile bud stage 7.302
SRR8316897Juvenile bud stage 3.410
SRR8316894Third green stage 2.163
SRR8316900Third green stage 8.458
SRR8316901Third green stage 6.635
SRR8316898Complete white stage 3.606
SRR8316899Complete white stage 10.140
SRR8316903Complete white stage 4.596
SRR8316902Silver flowering stage3.194
SRR8316904Silver flowering stage5.991
SRR8316905Silver flowering stage2.381
SRR8316906Gold flowering stage 8.068
SRR8316907Gold flowering stage 6.869
SRR8316908Gold flowering stage 7.597
SRP132670SRR6706286Control5.141
SRR6706287Light intensity 50%5.672
SRR6706288Light intensity 20%5.342
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.927
CNS0095593Slightly white alabastrum(diploid) 27.993
CNS0095594Slightly white alabastrum(diploid) 35.895
CNS0095595Whole white alabastrum(diploid) 29.624
CNS0095596Whole white alabastrum(diploid) 39.766
CNS0095597Whole white alabastrum(diploid) 49.218
CNS0095598Silvery flower (diploied) 17.761
CNS0095599Silvery flower (diploied) 28.667
CNS0095600Silvery flower (diploied) 37.490
CNS0095601Golden flower (diploid) 111.924
CNS0095602Golden flower (diploid) 212.406
CNS0095603Golden flower (diploid) 311.322
CNS0095604Slightly white alabastrum(tetraploid) 112.091
CNS0095605Slightly white alabastrum(tetraploid) 210.799
CNS0095606Slightly white alabastrum(tetraploid) 318.876
CNS0095607Whole white alabastrum(tetraploid) 114.938
CNS0095608Whole white alabastrum(tetraploid) 220.651
CNS0095609Whole white alabastrum(tetraploid) 315.987
CNS0095610Silvery flower (tetraploid) 118.108
CNS0095611Silvery flower (tetraploid) 224.175
CNS0095612Silvery flower (tetraploid) 314.532
CNS0095613Golden flower (tetraploid) 113.229
CNS0095614Golden flower (tetraploid) 215.831
CNS0095615Golden flower (tetraploid) 322.722
CRA001975CRR073297Stem 16.971
CRR073298Stem 26.713
CRR073299Stem 36.714
CRR073300Leaf 15.452
CRR073301Leaf 24.558
CRR073302Leaf 34.886
CRR073303Juvenile bud 15.882
CRR073304Juvenile bud 23.848
CRR073305Juvenile bud 34.156
CRR073306Third green 12.851
CRR073307Third green 22.928
CRR073308Third green 31.907
CRR073309Second white 14.120
CRR073310Second white 24.439
CRR073311Second white 35.022
CRR073312Silver flowering 17.483
CRR073313Silver flowering 26.528
CRR073314Silver flowering 34.117
CRR073315Gold flowering 13.237
CRR073316Gold flowering 23.862
CRR073317Gold flowering 34.165
CRR073318Tawny withering 13.711
CRR073319Tawny withering 23.877
CRR073320Tawny withering 36.522