Gene detail

Detail information of GWHGAAZE008742

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI17911.3	0	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q9FH50\|APO3_ARATH	1E-101	APO protein 3, mitochondrial (Precursor)
trEMBL	tr\|D7SQI0\|D7SQI0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI17911.3}
TAIR10	AT5G61930.2	8E-85	Arabidopsis thaliana protein of unknown function (DUF794)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	89701733	89703455	+
GWHAAZE00000002	mRNA	89701733	89703455	+
GWHAAZE00000002	exon	89701733	89702061	+
GWHAAZE00000002	exon	89702216	89702646	+
GWHAAZE00000002	exon	89703043	89703455	+
GWHAAZE00000002	CDS	89701733	89702061	+
GWHAAZE00000002	CDS	89702216	89702646	+
GWHAAZE00000002	CDS	89703043	89703455	+

Transcript Sequence
>GWHTAAZE008752 ATGTTCTTACAAAGCTACGACATGAAACTAAATAAATCACCTCATCTTTGTGCATTTTTTTCGTCTGGGTCTACTTGTGTGGAGTTGCCAAGGAAGCTAATCAAGTTTGAGAGGAAGCCAATGGTGACGAGTGTCAACCAACTTAAGCGACAAGCTAGATTGGAAAAGCATAAGAGGCTCACAGTGAAAGAGGTTACGCTAACTCCTCCTGAGAATGGGCTATTGGTCAAAAGATTAATCCTAATTGCTCATCAAGTTTTAGCTGCCAGAGCCCAATTATTCCCTAGTCTTTCAAGGGCTGTCGCAAGCATTCCTGTTTACTCATGCAGCTTGTGTGGAGAAGTTCATGTAGGCCATCCACCGCATAAGATCAAAACTTGCAATGTCGCTGGTAGCCCAAAGAGCAAGGAGCATGTTTGGGAAAGAGGAGGAATGGAACATGTTTTGCCTGTAGTGGAATCTTTTCATTTGTATGACAGGATAGGGAGAGCTGTGACACATAACGAACGACTCCTAGTTGATCGGATCCCAGCAATTGTAGAATTGTGCATCCAAGCAGGGGTGGACATCCCTGAGTACCCAGTTAGGAGAAGAGAATTTCCTGTCTACCAAGTTGCTGGGAGAATGATGGATTTTGAGCGCAGGTTTCCACATAATAATTCATCCATAAAAGAAGTTAACACGTACGGGTTTTGGGGGAACAAAAGGAAGTTGATTGAAGACAAGAAATCTTTGAGTTTGCCTTACAATGATATACAAGGTTTTGCCACGAGAGGCATGGAAGCGTGGGAGAAGATGCGTGCAGGAGCCATAACACTAATGAAGAGATACAGTGTCCAAACATGCGGATATTGCCCAGAGGTACAAGTGGGGCCAATGGGTCATAGGGTGAGGCAATGTTATGCGTACAAACACCAGATGAGGGACGGACAACACGCTTGGCAGGAAGCAACTATTGATGATTTGATCCCACCGGTGTACGTGTGGCATGTACAAGATCCACAACATCATCCTGAGCCGTTAGTGGATGGTTTAAGAAGGTACTACGGAAAGTTGCCCGCTGTTGTGGAGCTGTTTGCACAAGCTGGAGCGCGTGTGGGAGATGGTTACAGCAAGGTGATGAGAGAAGATATTGCGGTGCCTGAATTGAATGAAGAGAAATTGGTTGTATGA

Network for GWHGAAZE008742

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05634.12	APO_RNA-bind	26	211	1.70E-59
PF05634.12	APO_RNA-bind	255	368	3.70E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003723	molecular_function	RNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.960
	SRR3591706	second leaf	15.020
	SRR3591707	mature leaf	13.529
	SRR3591708	Shoot apex	23.892
	SRR3591709	Stem	22.198
	SRR3591710	White floral bud	32.692
	SRR3591711	White flower	34.480
	SRR3591712	Green floral bud	40.505
	SRR3591713	Yellow flower	29.184
SRP173429	SRR8316895	Juvenile bud stage	11.590
	SRR8316896	Juvenile bud stage	15.578
	SRR8316897	Juvenile bud stage	6.967
	SRR8316894	Third green stage	6.799
	SRR8316900	Third green stage	13.866
	SRR8316901	Third green stage	14.342
	SRR8316898	Complete white stage	3.936
	SRR8316899	Complete white stage	18.758
	SRR8316903	Complete white stage	8.336
	SRR8316902	Silver flowering stage	4.940
	SRR8316904	Silver flowering stage	7.306
	SRR8316905	Silver flowering stage	3.098
	SRR8316906	Gold flowering stage	9.333
	SRR8316907	Gold flowering stage	8.188
	SRR8316908	Gold flowering stage	9.610
SRP132670	SRR6706286	Control	10.791
	SRR6706287	Light intensity 50%	11.933
	SRR6706288	Light intensity 20%	13.061
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.224
	CNS0095593	Slightly white alabastrum(diploid) 2	20.172
	CNS0095594	Slightly white alabastrum(diploid) 3	15.212
	CNS0095595	Whole white alabastrum(diploid) 2	11.947
	CNS0095596	Whole white alabastrum(diploid) 3	10.397
	CNS0095597	Whole white alabastrum(diploid) 4	9.882
	CNS0095598	Silvery flower (diploied) 1	17.334
	CNS0095599	Silvery flower (diploied) 2	10.124
	CNS0095600	Silvery flower (diploied) 3	7.230
	CNS0095601	Golden flower (diploid) 1	10.394
	CNS0095602	Golden flower (diploid) 2	8.119
	CNS0095603	Golden flower (diploid) 3	7.209
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.959
	CNS0095605	Slightly white alabastrum(tetraploid) 2	27.944
	CNS0095606	Slightly white alabastrum(tetraploid) 3	38.430
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.202
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.328
	CNS0095609	Whole white alabastrum(tetraploid) 3	31.191
	CNS0095610	Silvery flower (tetraploid) 1	30.953
	CNS0095611	Silvery flower (tetraploid) 2	18.265
	CNS0095612	Silvery flower (tetraploid) 3	19.625
	CNS0095613	Golden flower (tetraploid) 1	18.873
	CNS0095614	Golden flower (tetraploid) 2	24.230
	CNS0095615	Golden flower (tetraploid) 3	12.417
CRA001975	CRR073297	Stem 1	16.252
	CRR073298	Stem 2	12.765
	CRR073299	Stem 3	5.844
	CRR073300	Leaf 1	14.442
	CRR073301	Leaf 2	14.700
	CRR073302	Leaf 3	6.090
	CRR073303	Juvenile bud 1	6.359
	CRR073304	Juvenile bud 2	3.686
	CRR073305	Juvenile bud 3	4.257
	CRR073306	Third green 1	1.995
	CRR073307	Third green 2	2.180
	CRR073308	Third green 3	1.882
	CRR073309	Second white 1	1.004
	CRR073310	Second white 2	0.792
	CRR073311	Second white 3	1.712
	CRR073312	Silver flowering 1	1.042
	CRR073313	Silver flowering 2	1.326
	CRR073314	Silver flowering 3	1.227
	CRR073315	Gold flowering 1	2.650
	CRR073316	Gold flowering 2	3.687
	CRR073317	Gold flowering 3	1.993
	CRR073318	Tawny withering 1	7.766
	CRR073319	Tawny withering 2	8.165
	CRR073320	Tawny withering 3	5.472