Gene detail

Detail information of GWHGAAZE008733

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006446684.1	1.6357E-106	hypothetical protein CICLE_v10014503mg [Citrus clementina]
Swissprot	tr\|Q39054\|CNX1_ARATH	2E-100	Molybdopterin adenylyltransferase
trEMBL	tr\|V4W1Y8\|V4W1Y8_9ROSI	6E-107	Uncharacterized protein {ECO:0000313\|EMBL:ESR59924.1}
TAIR10	AT5G20990.1	2E-84	molybdopterin biosynthesis CNX1 protein / molybdenum cofactor biosynthesis enzyme CNX1 (CNX1)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	89495789	89501133	-
GWHAAZE00000002	mRNA	89495789	89501133	-
GWHAAZE00000002	exon	89495789	89496007	-
GWHAAZE00000002	exon	89497620	89497682	-
GWHAAZE00000002	exon	89498388	89498444	-
GWHAAZE00000002	exon	89499432	89499538	-
GWHAAZE00000002	exon	89500336	89500493	-
GWHAAZE00000002	exon	89501126	89501133	-
GWHAAZE00000002	CDS	89501126	89501133	-
GWHAAZE00000002	CDS	89500336	89500493	-
GWHAAZE00000002	CDS	89499432	89499538	-
GWHAAZE00000002	CDS	89498388	89498444	-
GWHAAZE00000002	CDS	89497620	89497682	-
GWHAAZE00000002	CDS	89495789	89496007	-

Transcript Sequence
>GWHTAAZE008743 ATGAAGTTTGGTCCAAGAGCAGTTTCTGTTGTAAATTCATCATCTGAAAAACTAGGAGGAGCAAAGGTTGTTGCAACAGCTGTGGTTCCTGATGATGTTTCTCAAATCAAGGACATTCTGAGGAAATGGAGCGACGTTGACCAGATGGATTTGATCCTCACCCTTGGTGGCACTGGCTTCACCCCAAGAGATGTTACCCCTGAAGCAACGAAAGAATTGATACAGAAAGAAACTCCTGGTCTTCTATACGTCATGATGCAAGAGAGTCTCAAGGTGACACCATTTGCAGTGCTGTCACGTTCTGCAGCTGGAATAAGAGGATCAACGTTGGCAGTTGCCTCTGTTAATAACATCTCTCTGAGGATACTACTTTTCCTGTTATCTGATGAACAAATAATTAACATGCCGGGAAATCCTAATGCCGTAGCTGAGTGTATGGAGGCTTTGTTGCCGGTGCTTAAGCACGCATTGAAGCAGATAAGAGGGGACAAAAGAGAGAAGCATCCTCGCCATGTCCCTCATGCACAAGCAACTCCCACCGACACCTGGGAAAATAGTTTCAAGTCGGCTTCTAGTGGTGGCAACGAACCCGGTTGTTCTTGTTCCCATTAG

Network for GWHGAAZE008733

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00994.25	MoCF_biosynth	20	155	1.40E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15376	GPHN	Metabolic pathways	map01100
		Folate biosynthesis	map00790
		GABAergic synapse	map04727

Gene Ontology

GO term	Ontology	Name
GO:0006777	biological_process	Mo-molybdopterin cofactor biosynthetic process

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.578
	SRR3591706	second leaf	10.615
	SRR3591707	mature leaf	13.843
	SRR3591708	Shoot apex	23.147
	SRR3591709	Stem	30.929
	SRR3591710	White floral bud	18.431
	SRR3591711	White flower	22.662
	SRR3591712	Green floral bud	20.950
	SRR3591713	Yellow flower	24.764
SRP173429	SRR8316895	Juvenile bud stage	17.040
	SRR8316896	Juvenile bud stage	29.220
	SRR8316897	Juvenile bud stage	8.569
	SRR8316894	Third green stage	8.830
	SRR8316900	Third green stage	38.301
	SRR8316901	Third green stage	40.726
	SRR8316898	Complete white stage	18.518
	SRR8316899	Complete white stage	55.306
	SRR8316903	Complete white stage	27.922
	SRR8316902	Silver flowering stage	12.143
	SRR8316904	Silver flowering stage	9.783
	SRR8316905	Silver flowering stage	6.705
	SRR8316906	Gold flowering stage	17.119
	SRR8316907	Gold flowering stage	28.538
	SRR8316908	Gold flowering stage	16.258
SRP132670	SRR6706286	Control	29.378
	SRR6706287	Light intensity 50%	29.951
	SRR6706288	Light intensity 20%	33.859
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	32.477
	CNS0095593	Slightly white alabastrum(diploid) 2	33.081
	CNS0095594	Slightly white alabastrum(diploid) 3	34.697
	CNS0095595	Whole white alabastrum(diploid) 2	26.448
	CNS0095596	Whole white alabastrum(diploid) 3	32.366
	CNS0095597	Whole white alabastrum(diploid) 4	26.959
	CNS0095598	Silvery flower (diploied) 1	41.010
	CNS0095599	Silvery flower (diploied) 2	36.946
	CNS0095600	Silvery flower (diploied) 3	35.963
	CNS0095601	Golden flower (diploid) 1	42.359
	CNS0095602	Golden flower (diploid) 2	32.563
	CNS0095603	Golden flower (diploid) 3	29.986
	CNS0095604	Slightly white alabastrum(tetraploid) 1	31.113
	CNS0095605	Slightly white alabastrum(tetraploid) 2	26.015
	CNS0095606	Slightly white alabastrum(tetraploid) 3	37.420
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.064
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.533
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.351
	CNS0095610	Silvery flower (tetraploid) 1	35.603
	CNS0095611	Silvery flower (tetraploid) 2	32.018
	CNS0095612	Silvery flower (tetraploid) 3	36.334
	CNS0095613	Golden flower (tetraploid) 1	17.869
	CNS0095614	Golden flower (tetraploid) 2	24.029
	CNS0095615	Golden flower (tetraploid) 3	15.057
CRA001975	CRR073297	Stem 1	40.870
	CRR073298	Stem 2	38.718
	CRR073299	Stem 3	34.355
	CRR073300	Leaf 1	51.720
	CRR073301	Leaf 2	48.738
	CRR073302	Leaf 3	35.064
	CRR073303	Juvenile bud 1	50.185
	CRR073304	Juvenile bud 2	25.380
	CRR073305	Juvenile bud 3	55.131
	CRR073306	Third green 1	9.374
	CRR073307	Third green 2	7.864
	CRR073308	Third green 3	9.661
	CRR073309	Second white 1	14.557
	CRR073310	Second white 2	12.436
	CRR073311	Second white 3	9.618
	CRR073312	Silver flowering 1	11.306
	CRR073313	Silver flowering 2	15.330
	CRR073314	Silver flowering 3	12.067
	CRR073315	Gold flowering 1	42.484
	CRR073316	Gold flowering 2	45.692
	CRR073317	Gold flowering 3	28.525
	CRR073318	Tawny withering 1	37.265
	CRR073319	Tawny withering 2	35.656
	CRR073320	Tawny withering 3	29.695