Detail information of GWHGAAZE008716


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCBI16571.31.73139E-55unnamed protein product [Vitis vinifera]
Swissprottr|F4I1T7|NP214_ARATH6E-43Nuclear pore complex protein NUP214 {ECO:0000303|PubMed:21189294}
trEMBLtr|W6JJ76|W6JJ76_NICBE2E-49Nuclear pore complex protein Nup214 {ECO:0000313|EMBL:BAO49698.1}
TAIR10AT1G55540.17E-42Nuclear pore complex protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene8888679388891589-
GWHAAZE00000002mRNA8888679388891589-
GWHAAZE00000002exon8888679388887955-
GWHAAZE00000002exon8888886988889076-
GWHAAZE00000002exon8889066888890977-
GWHAAZE00000002exon8889146688891589-
GWHAAZE00000002five_prime_UTR8889150788891589-
GWHAAZE00000002CDS8889146688891506-
GWHAAZE00000002CDS8889066888890977-
GWHAAZE00000002CDS8888886988889076-
GWHAAZE00000002CDS8888679388887955-
Transcript Sequence

Network for GWHGAAZE008716

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14317NUP214, CAN RNA transport map03013

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf12.786
SRR3591706second leaf6.705
SRR3591707mature leaf3.735
SRR3591708Shoot apex13.816
SRR3591709Stem8.675
SRR3591710White floral bud12.495
SRR3591711White flower14.527
SRR3591712Green floral bud14.149
SRR3591713Yellow flower7.637
SRP173429 SRR8316895Juvenile bud stage 7.893
SRR8316896Juvenile bud stage 10.125
SRR8316897Juvenile bud stage 5.150
SRR8316894Third green stage 5.424
SRR8316900Third green stage 9.462
SRR8316901Third green stage 10.195
SRR8316898Complete white stage 1.550
SRR8316899Complete white stage 10.367
SRR8316903Complete white stage 5.741
SRR8316902Silver flowering stage2.492
SRR8316904Silver flowering stage5.147
SRR8316905Silver flowering stage2.096
SRR8316906Gold flowering stage 5.827
SRR8316907Gold flowering stage 6.032
SRR8316908Gold flowering stage 4.094
SRP132670SRR6706286Control7.151
SRR6706287Light intensity 50%9.116
SRR6706288Light intensity 20%9.461
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.619
CNS0095593Slightly white alabastrum(diploid) 25.203
CNS0095594Slightly white alabastrum(diploid) 34.605
CNS0095595Whole white alabastrum(diploid) 25.915
CNS0095596Whole white alabastrum(diploid) 34.493
CNS0095597Whole white alabastrum(diploid) 44.249
CNS0095598Silvery flower (diploied) 16.821
CNS0095599Silvery flower (diploied) 25.443
CNS0095600Silvery flower (diploied) 312.266
CNS0095601Golden flower (diploid) 18.584
CNS0095602Golden flower (diploid) 211.586
CNS0095603Golden flower (diploid) 310.943
CNS0095604Slightly white alabastrum(tetraploid) 17.394
CNS0095605Slightly white alabastrum(tetraploid) 23.769
CNS0095606Slightly white alabastrum(tetraploid) 311.603
CNS0095607Whole white alabastrum(tetraploid) 13.755
CNS0095608Whole white alabastrum(tetraploid) 22.266
CNS0095609Whole white alabastrum(tetraploid) 39.963
CNS0095610Silvery flower (tetraploid) 18.256
CNS0095611Silvery flower (tetraploid) 28.997
CNS0095612Silvery flower (tetraploid) 36.476
CNS0095613Golden flower (tetraploid) 13.068
CNS0095614Golden flower (tetraploid) 25.846
CNS0095615Golden flower (tetraploid) 33.914
CRA001975CRR073297Stem 116.920
CRR073298Stem 216.680
CRR073299Stem 312.560
CRR073300Leaf 115.164
CRR073301Leaf 215.244
CRR073302Leaf 38.259
CRR073303Juvenile bud 18.942
CRR073304Juvenile bud 25.618
CRR073305Juvenile bud 319.804
CRR073306Third green 12.099
CRR073307Third green 21.515
CRR073308Third green 32.463
CRR073309Second white 12.046
CRR073310Second white 23.545
CRR073311Second white 32.815
CRR073312Silver flowering 13.431
CRR073313Silver flowering 22.347
CRR073314Silver flowering 31.728
CRR073315Gold flowering 14.403
CRR073316Gold flowering 28.464
CRR073317Gold flowering 35.346
CRR073318Tawny withering 17.683
CRR073319Tawny withering 28.300
CRR073320Tawny withering 310.753