Gene detail

Detail information of GWHGAAZE008696

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011080521.1	PREDICTED: indole-3-acetaldehyde oxidase [Sesamum indicum]
Swissprot	tr\|Q7G191\|ALDO4_ARATH	Benzaldehyde dehydrogenase (NAD(+))
trEMBL	tr\|F6HAB3\|F6HAB3_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB49192.1}
TAIR10	AT1G04580.1	aldehyde oxidase 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	88056561	88069659	+
GWHAAZE00000002	mRNA	88056561	88069659	+
GWHAAZE00000002	exon	88056561	88056996	+
GWHAAZE00000002	exon	88058209	88058294	+
GWHAAZE00000002	exon	88058362	88058438	+
GWHAAZE00000002	exon	88059165	88059234	+
GWHAAZE00000002	exon	88059310	88059519	+
GWHAAZE00000002	exon	88059970	88060188	+
GWHAAZE00000002	exon	88063856	88064243	+
GWHAAZE00000002	exon	88064314	88064638	+
GWHAAZE00000002	exon	88064737	88064821	+
GWHAAZE00000002	exon	88065139	88065234	+
GWHAAZE00000002	exon	88065458	88065556	+
GWHAAZE00000002	exon	88067011	88067200	+
GWHAAZE00000002	exon	88069415	88069659	+
GWHAAZE00000002	CDS	88056561	88056996	+
GWHAAZE00000002	CDS	88058209	88058294	+
GWHAAZE00000002	CDS	88058362	88058438	+
GWHAAZE00000002	CDS	88059165	88059234	+
GWHAAZE00000002	CDS	88059310	88059519	+
GWHAAZE00000002	CDS	88059970	88060188	+
GWHAAZE00000002	CDS	88063856	88064243	+
GWHAAZE00000002	CDS	88064314	88064638	+
GWHAAZE00000002	CDS	88064737	88064821	+
GWHAAZE00000002	CDS	88065139	88065234	+
GWHAAZE00000002	CDS	88065458	88065556	+
GWHAAZE00000002	CDS	88067011	88067200	+
GWHAAZE00000002	CDS	88069415	88069659	+

Transcript Sequence
>GWHTAAZE008706 ATGGTTGTTGTTTCTTTGTCTAAAACTGGAGTTATGGTAAATGAGATTCAGCTGGCTTTTGGTGCTTATGGGACTAAACATGCAATAAGGGCAAGAAAAGTTGAAGAATATCTAGTTGGCAAAGTACTAAGTGTTGGTGTTTTGTATGAAGCTGTTAAATTAGTTAGGGCTACTGTAGTACCTGAACATGGCACTTCAGATACTGCTTATCGGTCAAGCTTGGCTGTGGGGTTTCTTTTTGAGTTTCTTAGCCCTTTAGTTAATGAATGTACTTATACTTTGCTACAAAATGCTGCGAAAATGAATAATGGGCCATTTGATGATATCGGAAGAATGGGATTGGTGTCATCTGCAAAGCAGGTGGTGGGATCAAGCAGAGAGCACTATCCGGTGGGTCAACCGATTACAAAGTCTGGTGCTGCCCTCCAAGCTTCTGGTGAAGCTATTTATGTGGATGACATTCCTTCACCAGAAAACTGCCTTTATGGAGCGTTTATTCATAGCACAATGCCTTTGGCAAGGATATCCCAAAAGGAGGAGAGCGTGGGATCTAAGACCATATTTGGTACTGAACCTTTATTTGCTGATGATATTACCAGGGAAACTAGCCGTATCAGATTTGAACCTGCTTTATCGCTTGTGAGAGGGATAGTGCCTGCCATGGGCGTGGTTGCAGATACGCAGAAGCGTGCCGATATGGCTGCAGCCATGGCCATTGTTGATTATGATACTGAAGATTTAGGACCACCCATTTTAACTGTTGAAGAGGCTGTTGAGAAATCAAGCTTTTATGAAGTCCCTCCTTTCTTATATCCAGAACATGTTGGTGATTTCTCAAAGGGAATGGCTGAAGCTGATCACAAGATTCTCTCAGCTGAGATCAAACTCGGGTCACAATACTATTTCTATATGGAGACACAAACTGCACTTGCGGTTCCAGATGAAGACAATTGCATGGTGGTTTACAGTTCATGTCAGTGCCCCGAGTATGCGCACACTGTTATTGCACAGTGTCTTGGTATACCAGAACATAATGTTCGTGTTGTTACGAGAAGGGTTGGTGGAGGCTTTGGTGGAAAGGCCATAAGAGCTATGCCTGTTGCTACAGCATCTGCACTTGCAGCCCACAAATTACGGCGCCCGGTCCGAATATATCTCAATCGAAAGACCGATATGATAATGGCAGGAGGAAGACATCCCATGAAGATAACATACAGCACTGGCTTCAGATCCGACGGGAAGATCACAGCTATACACCTGGATATCTTAATCAATGCGGGGATGTCTGCAGACATAAGCCCCATAATGCCACATAACATGTTGGGTGCTCTTAAGAAGTACGATTGTGGTGCTCTATCTTTCGACATAAAAGTATGCAAAACAAACCATTCTAGCAAATCTGCAATGCGAGCCCCGGGGGAAGTGCAAGCTTCTTTTATTGCTGAAGCTATAATAGAAAGCGTAAGCCTCATATCTTTCAATGGATGGGAGCCAGAAGAGTATACTTTGCCTTCTATTATGGATAAATTGGCCATATCTTCAAGATTTGAAAAACGGACTGAAATGATAAAAGAGTATAATCGGTGTAACAAATGGCAAAAAAAGGGTATTTCTCGAGTACCCATTGTGCATCAAGTGACATTGAGACCGACGCCGGGTAAAGTAAGCATTCTTTGGGACGGATCAGTGGTTGTAGAAGTTGGTGGGATTGAGCTGGGACAGGGGCTATGGACTAAGGTGAAACAAATGGCTGCTTTTGGTCTCGGTTTGGTTCAATGTGATGGAACCGAAGGACTCTTGGAGAAAGCAGGTGTTTTGGTTGAACGACTAATCCCTCTTAAGGAAAAGTTGCAGGAGCAAATGGGTTCTGTTACATGGGACGTCCTTATCCTTCAGGCTCAATACCAATCTGTAAACTTATCAGCAAGTTCTTACTTTGTGCCTGAATTCACTTCAACACACTACCTAAATTATGGTGCTGCAGTGAGTGAGGTGGAAGTAAATATTTTGACTGGAGAAACAAAAATTTTGCGAGCAGATATTATATATGACTGTGGACAGAGCATGAACCCTGCTGTTGATTTGGGACAGATTGAAGGGGCTTTTGTACAAGGAATTGGATTCTTTATGTCCGAAGAATACCTTACAAATTCAGATGGATTGGTGGTTGCAGATGGCACATGGACATACAAAATACCAACAATCGATACCATTCCCAAACAGTTCAATGTGGAGGTACTGAACAGTGGACATCACCAAAAACGCGTTCTCTCCTCTAAAGCTTCTGGTGAACCACCATTACTGATGGCGGTGTCGGTTCATTGTGCAACAAGAGCAGCCATTAAAGAAGCAAGAAAACAGCTTGGTTCTTGGTGTGGATTAGAAGAAGAAGAAAGACAAGATCCCAATTCTGATTCCACAATATTCCAGTTGGAGGTTCCAGCTACTATGCCTGTTGTCAAGAAACTGTGTGGATTGGACAGTGTGGACAAGTATCTTCAATCCTTGATTATGAAACAGTATTAA

Network for GWHGAAZE008696

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03450.18	CO_deh_flav_C	3	84	5.50E-16
PF01315.23	Ald_Xan_dh_C	145	245	3.60E-10
PF02738.19	Ald_Xan_dh_C2	273	488	3.60E-79
PF02738.19	Ald_Xan_dh_C2	498	590	4.90E-17
PF02738.19	Ald_Xan_dh_C2	620	739	7.20E-38

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09842	AAO3	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Carotenoid biosynthesis	map00906

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.421
	SRR3591706	second leaf	5.046
	SRR3591707	mature leaf	6.279
	SRR3591708	Shoot apex	3.727
	SRR3591709	Stem	5.569
	SRR3591710	White floral bud	2.261
	SRR3591711	White flower	2.731
	SRR3591712	Green floral bud	3.004
	SRR3591713	Yellow flower	1.246
SRP173429	SRR8316895	Juvenile bud stage	2.814
	SRR8316896	Juvenile bud stage	4.089
	SRR8316897	Juvenile bud stage	1.956
	SRR8316894	Third green stage	1.806
	SRR8316900	Third green stage	4.533
	SRR8316901	Third green stage	3.632
	SRR8316898	Complete white stage	0.558
	SRR8316899	Complete white stage	4.888
	SRR8316903	Complete white stage	1.734
	SRR8316902	Silver flowering stage	0.338
	SRR8316904	Silver flowering stage	0.243
	SRR8316905	Silver flowering stage	0.193
	SRR8316906	Gold flowering stage	0.578
	SRR8316907	Gold flowering stage	0.843
	SRR8316908	Gold flowering stage	0.998
SRP132670	SRR6706286	Control	4.186
	SRR6706287	Light intensity 50%	4.330
	SRR6706288	Light intensity 20%	4.314
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.662
	CNS0095593	Slightly white alabastrum(diploid) 2	4.240
	CNS0095594	Slightly white alabastrum(diploid) 3	2.749
	CNS0095595	Whole white alabastrum(diploid) 2	3.174
	CNS0095596	Whole white alabastrum(diploid) 3	2.535
	CNS0095597	Whole white alabastrum(diploid) 4	2.490
	CNS0095598	Silvery flower (diploied) 1	6.763
	CNS0095599	Silvery flower (diploied) 2	3.701
	CNS0095600	Silvery flower (diploied) 3	1.964
	CNS0095601	Golden flower (diploid) 1	5.070
	CNS0095602	Golden flower (diploid) 2	2.488
	CNS0095603	Golden flower (diploid) 3	3.031
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.809
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.346
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.858
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.313
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.984
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.571
	CNS0095610	Silvery flower (tetraploid) 1	2.029
	CNS0095611	Silvery flower (tetraploid) 2	3.415
	CNS0095612	Silvery flower (tetraploid) 3	1.261
	CNS0095613	Golden flower (tetraploid) 1	1.219
	CNS0095614	Golden flower (tetraploid) 2	1.889
	CNS0095615	Golden flower (tetraploid) 3	0.435
CRA001975	CRR073297	Stem 1	4.473
	CRR073298	Stem 2	3.915
	CRR073299	Stem 3	2.595
	CRR073300	Leaf 1	3.769
	CRR073301	Leaf 2	3.591
	CRR073302	Leaf 3	1.288
	CRR073303	Juvenile bud 1	3.257
	CRR073304	Juvenile bud 2	1.942
	CRR073305	Juvenile bud 3	3.922
	CRR073306	Third green 1	0.190
	CRR073307	Third green 2	0.321
	CRR073308	Third green 3	0.196
	CRR073309	Second white 1	0.078
	CRR073310	Second white 2	0.248
	CRR073311	Second white 3	0.159
	CRR073312	Silver flowering 1	0.097
	CRR073313	Silver flowering 2	0.034
	CRR073314	Silver flowering 3	0.030
	CRR073315	Gold flowering 1	3.171
	CRR073316	Gold flowering 2	5.943
	CRR073317	Gold flowering 3	2.117
	CRR073318	Tawny withering 1	3.350
	CRR073319	Tawny withering 2	3.021
	CRR073320	Tawny withering 3	2.196