Detail information of GWHGAAZE008657


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP15620.17.4731E-22unnamed protein product [Coffea canephora]
Swissprottr|Q56YN8|SMC3_ARATH3E-13Structural maintenance of chromosomes protein 3
trEMBLtr|A0A068V4B4|A0A068V4B4_COFCA3E-22Coffea canephora DH200=94 genomic scaffold, scaffold_101 {ECO:0000313|EMBL:CDP15620.1}
TAIR10AT2G27170.23E-12Structural maintenance of chromosomes (SMC) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene8682826186828861+
GWHAAZE00000002mRNA8682826186828861+
GWHAAZE00000002exon8682826186828506+
GWHAAZE00000002exon8682873686828861+
GWHAAZE00000002CDS8682826186828506+
GWHAAZE00000002CDS8682873686828861+
Transcript Sequence

Network for GWHGAAZE008657

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K06669SMC3, CSPG6 Cell cycle map04110
Cell cycle - yeastmap04111
Meiosis - yeastmap04113
Oocyte meiosismap04114

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.293
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.729
SRR3591710White floral bud0.247
SRR3591711White flower0.326
SRR3591712Green floral bud0.000
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.010
SRR8316896Juvenile bud stage 0.125
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.091
SRR8316900Third green stage 0.200
SRR8316901Third green stage 0.172
SRR8316898Complete white stage 0.375
SRR8316899Complete white stage 1.396
SRR8316903Complete white stage 0.207
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.207
SRR8316906Gold flowering stage 0.025
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.058
SRR6706287Light intensity 50%0.061
SRR6706288Light intensity 20%0.229
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.000
CNS0095593Slightly white alabastrum(diploid) 20.000
CNS0095594Slightly white alabastrum(diploid) 30.000
CNS0095595Whole white alabastrum(diploid) 20.237
CNS0095596Whole white alabastrum(diploid) 30.350
CNS0095597Whole white alabastrum(diploid) 40.000
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.149
CNS0095600Silvery flower (diploied) 30.000
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.000
CNS0095603Golden flower (diploid) 30.070
CNS0095604Slightly white alabastrum(tetraploid) 10.193
CNS0095605Slightly white alabastrum(tetraploid) 20.000
CNS0095606Slightly white alabastrum(tetraploid) 31.410
CNS0095607Whole white alabastrum(tetraploid) 10.221
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 31.580
CNS0095610Silvery flower (tetraploid) 11.768
CNS0095611Silvery flower (tetraploid) 20.768
CNS0095612Silvery flower (tetraploid) 31.021
CNS0095613Golden flower (tetraploid) 10.007
CNS0095614Golden flower (tetraploid) 20.146
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.168
CRR073298Stem 20.239
CRR073299Stem 30.000
CRR073300Leaf 10.528
CRR073301Leaf 20.576
CRR073302Leaf 30.175
CRR073303Juvenile bud 10.430
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.385
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000