Detail information of GWHGAAZE008647


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010067223.12.50996E-14PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Eucalyptus grandis]
trEMBLtr|A0A059BGZ5|A0A059BGZ5_EUCGR9E-15Uncharacterized protein {ECO:0000313|EMBL:KCW65319.1}
TAIR10AT3G55930.11E-11Pre-mRNA-splicing factor 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene8630367086304679-
GWHAAZE00000002mRNA8630367086304679-
GWHAAZE00000002exon8630465086304679-
GWHAAZE00000002exon8630390086304287-
GWHAAZE00000002exon8630367086303767-
GWHAAZE00000002CDS8630465086304679-
GWHAAZE00000002CDS8630390086304287-
GWHAAZE00000002CDS8630367086303767-
Transcript Sequence

Network for GWHGAAZE008647

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06544.13DUF1115831392.00E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12843PRPF3, PRP3 Spliceosome map03040

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf13.499
SRR3591706second leaf4.271
SRR3591707mature leaf4.087
SRR3591708Shoot apex14.957
SRR3591709Stem11.712
SRR3591710White floral bud0.660
SRR3591711White flower0.331
SRR3591712Green floral bud3.767
SRR3591713Yellow flower0.043
SRP173429 SRR8316895Juvenile bud stage 14.480
SRR8316896Juvenile bud stage 28.762
SRR8316897Juvenile bud stage 7.040
SRR8316894Third green stage 8.602
SRR8316900Third green stage 18.836
SRR8316901Third green stage 17.885
SRR8316898Complete white stage 4.016
SRR8316899Complete white stage 21.073
SRR8316903Complete white stage 7.621
SRR8316902Silver flowering stage4.865
SRR8316904Silver flowering stage7.446
SRR8316905Silver flowering stage2.981
SRR8316906Gold flowering stage 9.069
SRR8316907Gold flowering stage 15.122
SRR8316908Gold flowering stage 7.477
SRP132670SRR6706286Control18.638
SRR6706287Light intensity 50%17.379
SRR6706288Light intensity 20%18.293
CNP0000432CNS0095592Slightly white alabastrum(diploid) 124.778
CNS0095593Slightly white alabastrum(diploid) 227.520
CNS0095594Slightly white alabastrum(diploid) 329.172
CNS0095595Whole white alabastrum(diploid) 218.815
CNS0095596Whole white alabastrum(diploid) 317.858
CNS0095597Whole white alabastrum(diploid) 415.861
CNS0095598Silvery flower (diploied) 116.556
CNS0095599Silvery flower (diploied) 215.358
CNS0095600Silvery flower (diploied) 313.736
CNS0095601Golden flower (diploid) 116.573
CNS0095602Golden flower (diploid) 213.432
CNS0095603Golden flower (diploid) 316.412
CNS0095604Slightly white alabastrum(tetraploid) 1159.446
CNS0095605Slightly white alabastrum(tetraploid) 2154.641
CNS0095606Slightly white alabastrum(tetraploid) 3205.900
CNS0095607Whole white alabastrum(tetraploid) 1121.258
CNS0095608Whole white alabastrum(tetraploid) 2116.356
CNS0095609Whole white alabastrum(tetraploid) 3140.209
CNS0095610Silvery flower (tetraploid) 1129.534
CNS0095611Silvery flower (tetraploid) 2115.991
CNS0095612Silvery flower (tetraploid) 386.881
CNS0095613Golden flower (tetraploid) 1115.136
CNS0095614Golden flower (tetraploid) 2118.090
CNS0095615Golden flower (tetraploid) 379.807
CRA001975CRR073297Stem 128.168
CRR073298Stem 228.981
CRR073299Stem 334.706
CRR073300Leaf 128.947
CRR073301Leaf 230.022
CRR073302Leaf 335.820
CRR073303Juvenile bud 130.150
CRR073304Juvenile bud 221.766
CRR073305Juvenile bud 329.939
CRR073306Third green 112.269
CRR073307Third green 213.220
CRR073308Third green 39.541
CRR073309Second white 117.422
CRR073310Second white 212.735
CRR073311Second white 38.457
CRR073312Silver flowering 113.168
CRR073313Silver flowering 211.773
CRR073314Silver flowering 34.204
CRR073315Gold flowering 125.381
CRR073316Gold flowering 222.185
CRR073317Gold flowering 317.296
CRR073318Tawny withering 121.889
CRR073319Tawny withering 217.859
CRR073320Tawny withering 319.151