Gene detail

Detail information of GWHGAAZE008645

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006387264.1	1.17491E-30	hypothetical protein POPTR_1385s002001g [Populus trichocarpa]
trEMBL	tr\|U7DXA0\|U7DXA0_POPTR	4E-31	Uncharacterized protein {ECO:0000313\|EMBL:ERP46178.1}
TAIR10	AT1G28060.1	7E-25	Pre-mRNA-splicing factor 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	86206449	86209843	+
GWHAAZE00000002	mRNA	86206449	86209843	+
GWHAAZE00000002	exon	86206449	86206524	+
GWHAAZE00000002	exon	86206603	86206668	+
GWHAAZE00000002	exon	86206758	86206989	+
GWHAAZE00000002	exon	86207247	86207281	+
GWHAAZE00000002	exon	86208156	86208229	+
GWHAAZE00000002	exon	86209226	86209843	+
GWHAAZE00000002	CDS	86206449	86206524	+
GWHAAZE00000002	CDS	86206603	86206668	+
GWHAAZE00000002	CDS	86206758	86206989	+
GWHAAZE00000002	CDS	86207247	86207281	+
GWHAAZE00000002	CDS	86208156	86208229	+
GWHAAZE00000002	CDS	86209226	86209843	+

Transcript Sequence
>GWHTAAZE008655 ATGCATCACTACGCTAGATATATTAAAGAGTGGGAGGAACAGAGGTACAATACTTGTATCAAAGACACCTCTGAAGATTTTGTTCTTCCTGACATTCCCCCGCATCAGCAAGTTGTGCCTCCTCCTCCTCCTCCTCCTGAAGGAGCCACATGGAGACTCTCCCGATACTATGCAACCTCAGGAGCCTGGTGGATATTCTCCCTGACGTGTTCTTGGAGATTCTCCTGTGCAACCTCAGGAGCCTGGTGGATATTCTCCCGTGCAACGTCAGGAGCCTGGTGGATATTCTCCCAAGACTTCTCTTGGCACTTCTCTTCACGGAAATTCTTAAGATTATTCTCAGCCGCCTCCTTATGCTTCTCCTTCACATCAAGCACACTTGGTATGAGTTTGGTTCAGTCTCCACTAGATGCAAATATGGAACACAATTTGCGTAGATCAACTCGAAATAGAGGACCACCATGTGCATATACTCCTAGCGAGGTGGGACATGGTGTTGGCTCCAACTCAGATGATGAAATAGAAGCTCCAGATACTATGATGTATGAACAGTTGATGGCATGCTCAAAACCTGTAAGAATGAATCATGCCGACTTCTGCAGATTAGTTATGGGGTTTACTGAAATGTACACTCCTCGTGCTCATCCTGTTCAACAACCGCTCTTTACGTACGATCCGAATGAGGAGACTATAGTTTCGGTGTACAGGATCAACGACCTTTCAGATGAAGAGCTTAGCGTCGAGATTTACAATTACGCCTTTGGGTACCTATTGGCAGGATGTATGGTGCGTTTGAAAGATGGTTTTAGCATGGTGGTTGTTAGTGGAAAACAAAATGGCATCGCTAAATTTAGGAGGCTTATGCTTAAGTGTATCAATTGGGCTGCTTTGAAAAAATCTCAAAACACTGAAGATGAAGAAAGCAAGAAGAAGAATGAGGTCAATAAATGCGTGTTGCTTTGGGAGGGGAGTGTTGCTAAAGCGAGCTTCAAATGGTTTAACGAATACAAGTGTAAGACTGAAGCTGAGGCGCACCAGGTGTTTATGGATGCTGGCATTGCCGACTATTGGGAACTCGCAGTTAACTACTCTGCCGACTGA

Network for GWHGAAZE008645

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06544.13	DUF1115	234	360	1.50E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12843	PRPF3, PRP3	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.034
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.023
	SRR3591708	Shoot apex	0.094
	SRR3591709	Stem	0.052
	SRR3591710	White floral bud	0.185
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.232
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.549
	SRR8316896	Juvenile bud stage	0.845
	SRR8316897	Juvenile bud stage	0.297
	SRR8316894	Third green stage	0.083
	SRR8316900	Third green stage	0.364
	SRR8316901	Third green stage	0.627
	SRR8316898	Complete white stage	0.123
	SRR8316899	Complete white stage	0.094
	SRR8316903	Complete white stage	0.419
	SRR8316902	Silver flowering stage	0.204
	SRR8316904	Silver flowering stage	0.245
	SRR8316905	Silver flowering stage	0.125
	SRR8316906	Gold flowering stage	0.629
	SRR8316907	Gold flowering stage	1.314
	SRR8316908	Gold flowering stage	0.153
SRP132670	SRR6706286	Control	0.250
	SRR6706287	Light intensity 50%	0.289
	SRR6706288	Light intensity 20%	0.104
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.589
	CNS0095593	Slightly white alabastrum(diploid) 2	1.273
	CNS0095594	Slightly white alabastrum(diploid) 3	2.287
	CNS0095595	Whole white alabastrum(diploid) 2	1.203
	CNS0095596	Whole white alabastrum(diploid) 3	2.219
	CNS0095597	Whole white alabastrum(diploid) 4	2.345
	CNS0095598	Silvery flower (diploied) 1	0.231
	CNS0095599	Silvery flower (diploied) 2	1.346
	CNS0095600	Silvery flower (diploied) 3	0.512
	CNS0095601	Golden flower (diploid) 1	1.171
	CNS0095602	Golden flower (diploid) 2	0.146
	CNS0095603	Golden flower (diploid) 3	0.191
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.595
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.530
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.323
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.381
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.503
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.732
	CNS0095610	Silvery flower (tetraploid) 1	0.669
	CNS0095611	Silvery flower (tetraploid) 2	0.484
	CNS0095612	Silvery flower (tetraploid) 3	0.318
	CNS0095613	Golden flower (tetraploid) 1	0.482
	CNS0095614	Golden flower (tetraploid) 2	0.706
	CNS0095615	Golden flower (tetraploid) 3	0.273
CRA001975	CRR073297	Stem 1	1.231
	CRR073298	Stem 2	0.543
	CRR073299	Stem 3	0.237
	CRR073300	Leaf 1	0.513
	CRR073301	Leaf 2	0.624
	CRR073302	Leaf 3	0.183
	CRR073303	Juvenile bud 1	0.066
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.291
	CRR073307	Third green 2	0.083
	CRR073308	Third green 3	0.119
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	1.156
	CRR073311	Second white 3	0.349
	CRR073312	Silver flowering 1	0.140
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.254
	CRR073315	Gold flowering 1	0.005
	CRR073316	Gold flowering 2	0.276
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.295
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.024