Detail information of GWHGAAZE008644


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009800257.11.26172E-11PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Nicotiana sylvestris]
trEMBLtr|A0A059BGZ5|A0A059BGZ5_EUCGR8E-12Uncharacterized protein {ECO:0000313|EMBL:KCW65319.1}
TAIR10AT1G28060.10.000000002Pre-mRNA-splicing factor 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene8615000486150438-
GWHAAZE00000002mRNA8615000486150438-
GWHAAZE00000002exon8615000486150438-
GWHAAZE00000002CDS8615000486150438-
Transcript Sequence

Network for GWHGAAZE008644

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06544.13DUF1115751422.30E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12843PRPF3, PRP3 Spliceosome map03040

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.000
SRR3591710White floral bud0.167
SRR3591711White flower0.000
SRR3591712Green floral bud0.125
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 6.049
SRR8316896Juvenile bud stage 7.084
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 2.200
SRR8316900Third green stage 5.479
SRR8316901Third green stage 3.708
SRR8316898Complete white stage 1.685
SRR8316899Complete white stage 2.547
SRR8316903Complete white stage 2.789
SRR8316902Silver flowering stage0.551
SRR8316904Silver flowering stage0.245
SRR8316905Silver flowering stage0.158
SRR8316906Gold flowering stage 0.172
SRR8316907Gold flowering stage 0.162
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control8.738
SRR6706287Light intensity 50%7.586
SRR6706288Light intensity 20%8.038
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.965
CNS0095593Slightly white alabastrum(diploid) 25.059
CNS0095594Slightly white alabastrum(diploid) 35.307
CNS0095595Whole white alabastrum(diploid) 24.990
CNS0095596Whole white alabastrum(diploid) 34.183
CNS0095597Whole white alabastrum(diploid) 44.736
CNS0095598Silvery flower (diploied) 15.681
CNS0095599Silvery flower (diploied) 20.383
CNS0095600Silvery flower (diploied) 30.825
CNS0095601Golden flower (diploid) 11.788
CNS0095602Golden flower (diploid) 21.267
CNS0095603Golden flower (diploid) 30.682
CNS0095604Slightly white alabastrum(tetraploid) 10.220
CNS0095605Slightly white alabastrum(tetraploid) 20.103
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.044
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 16.450
CRR073298Stem 24.640
CRR073299Stem 36.050
CRR073300Leaf 12.381
CRR073301Leaf 24.575
CRR073302Leaf 33.623
CRR073303Juvenile bud 15.667
CRR073304Juvenile bud 25.052
CRR073305Juvenile bud 31.677
CRR073306Third green 11.911
CRR073307Third green 21.390
CRR073308Third green 30.141
CRR073309Second white 10.000
CRR073310Second white 22.579
CRR073311Second white 30.000
CRR073312Silver flowering 10.196
CRR073313Silver flowering 20.507
CRR073314Silver flowering 30.426
CRR073315Gold flowering 12.236
CRR073316Gold flowering 24.164
CRR073317Gold flowering 31.133
CRR073318Tawny withering 11.204
CRR073319Tawny withering 20.985
CRR073320Tawny withering 34.250