Gene detail

Detail information of GWHGAAZE008643

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU39581.1	5.26067E-46	hypothetical protein MIMGU_mgv1a0224472mg, partial [Erythranthe guttata]
Swissprot	tr\|Q8VX13\|PDI13_ARATH	5E-34	Protein disulfide isomerase-like 1-3 (Precursor)
trEMBL	tr\|A0A022RHC1\|A0A022RHC1_ERYGU	2E-46	Uncharacterized protein {ECO:0000313\|EMBL:EYU39581.1} (Fragment)
TAIR10	AT3G54960.2	3E-31	PDI-like 1-3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	86103968	86116330	+
GWHAAZE00000002	mRNA	86103968	86116330	+
GWHAAZE00000002	exon	86103968	86103990	+
GWHAAZE00000002	exon	86105338	86105452	+
GWHAAZE00000002	exon	86106153	86106224	+
GWHAAZE00000002	exon	86106306	86106389	+
GWHAAZE00000002	exon	86112984	86113149	+
GWHAAZE00000002	exon	86113224	86113342	+
GWHAAZE00000002	exon	86113434	86113517	+
GWHAAZE00000002	exon	86116151	86116330	+
GWHAAZE00000002	CDS	86103968	86103990	+
GWHAAZE00000002	CDS	86105338	86105452	+
GWHAAZE00000002	CDS	86106153	86106224	+
GWHAAZE00000002	CDS	86106306	86106389	+
GWHAAZE00000002	CDS	86112984	86113149	+
GWHAAZE00000002	CDS	86113224	86113342	+
GWHAAZE00000002	CDS	86113434	86113517	+
GWHAAZE00000002	CDS	86116151	86116330	+

Transcript Sequence
>GWHTAAZE008653 ATGGAGATTGAACCACCAGATGGGCCTCAGACAAATAGACGTTTCGGGTTTGGAATTCTTCTATTGGAACTTATCACTGGTCAGAGAGCTCTAGAATTTGGAAAGGCCAGGAACCAGAAAGAAGCTATGTTTGATTGGGAAAAGAAGCTTGATGTGTTGGTGGATAAGGACTTGAAAAACAGCTATGACAGAATTGAGCTCAAGGAAATGGACTTGGAATCAAAGACGAAGCGTAGCAAGAAAAAAGTGGTTGAAGACAATTGTAACAAGAAAAAAATAGTTGAAGATTTCATTGGTCCAGAGAGTGAGGAACTTCCTGCTGCTTCAAAACTGGAAGATGGTTTCAGCGTCTACCAGACTGCCTGTCCTGATATGGCGAAGCTCGTTCATATTGATCCCCAACGAAAGCGTCCAGCTTTTGTATTGTTAAAGGAGGAAGCTGAAAAAATTAGTCACTTTGGGGTACAATTCACCAAATCTGGAATTGCTGAATTTGTGTTTGATAACAAGCTTCCCGTGGTCACTAATTTTATGAGGGAGAGTGTCCCACTCATGTTTGACAATCCAATTAACAAACAGTTGATACTCTTTACCACTTCTTCGAGTGATTCTCAGAAGTTTATACCTATATTTCAAGAGGCAGCAAAGGACGTCAAAGGAGAGGGTCCAGAGAGTGAGGAACTTGCTGCTGCTTCGAAACTGGAAGATGGTGTCAGCTTCTACCGGACTGCCACTGCCTGTCCTGATGTGGCAAAGCTCTTTAACATTGATCCCAAAGGAAAGCATCCAGCTCTTGTGTTAAAGGAGGCTGAAAAAAATTGTCACTTTGGTAATGTCCCTTAG

Network for GWHGAAZE008643

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13848.7	Thioredoxin_6	107	221	5.70E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09580	PDIA1, P4HB	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.971
	SRR3591706	second leaf	0.851
	SRR3591707	mature leaf	0.413
	SRR3591708	Shoot apex	2.042
	SRR3591709	Stem	0.835
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.133
	SRR3591713	Yellow flower	0.052
SRP173429	SRR8316895	Juvenile bud stage	2.211
	SRR8316896	Juvenile bud stage	2.838
	SRR8316897	Juvenile bud stage	1.300
	SRR8316894	Third green stage	0.909
	SRR8316900	Third green stage	2.709
	SRR8316901	Third green stage	3.533
	SRR8316898	Complete white stage	1.245
	SRR8316899	Complete white stage	1.916
	SRR8316903	Complete white stage	1.432
	SRR8316902	Silver flowering stage	0.897
	SRR8316904	Silver flowering stage	1.486
	SRR8316905	Silver flowering stage	0.560
	SRR8316906	Gold flowering stage	2.155
	SRR8316907	Gold flowering stage	1.376
	SRR8316908	Gold flowering stage	0.823
SRP132670	SRR6706286	Control	1.329
	SRR6706287	Light intensity 50%	1.159
	SRR6706288	Light intensity 20%	1.285
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.070
	CNS0095593	Slightly white alabastrum(diploid) 2	1.930
	CNS0095594	Slightly white alabastrum(diploid) 3	2.463
	CNS0095595	Whole white alabastrum(diploid) 2	1.851
	CNS0095596	Whole white alabastrum(diploid) 3	2.240
	CNS0095597	Whole white alabastrum(diploid) 4	2.383
	CNS0095598	Silvery flower (diploied) 1	2.232
	CNS0095599	Silvery flower (diploied) 2	1.762
	CNS0095600	Silvery flower (diploied) 3	1.039
	CNS0095601	Golden flower (diploid) 1	1.556
	CNS0095602	Golden flower (diploid) 2	1.360
	CNS0095603	Golden flower (diploid) 3	1.115
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.025
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.999
	CRR073298	Stem 2	1.099
	CRR073299	Stem 3	0.614
	CRR073300	Leaf 1	1.248
	CRR073301	Leaf 2	0.824
	CRR073302	Leaf 3	1.314
	CRR073303	Juvenile bud 1	0.955
	CRR073304	Juvenile bud 2	0.507
	CRR073305	Juvenile bud 3	0.576
	CRR073306	Third green 1	0.524
	CRR073307	Third green 2	0.229
	CRR073308	Third green 3	0.188
	CRR073309	Second white 1	0.181
	CRR073310	Second white 2	0.340
	CRR073311	Second white 3	0.280
	CRR073312	Silver flowering 1	0.158
	CRR073313	Silver flowering 2	0.101
	CRR073314	Silver flowering 3	0.340
	CRR073315	Gold flowering 1	1.143
	CRR073316	Gold flowering 2	0.616
	CRR073317	Gold flowering 3	0.382
	CRR073318	Tawny withering 1	0.416
	CRR073319	Tawny withering 2	0.292
	CRR073320	Tawny withering 3	0.552