Detail information of GWHGAAZE008642


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010101509.11.01381E-09hypothetical protein L484_017259 [Morus notabilis]
trEMBLtr|W9RFK8|W9RFK8_9ROSA4E-10Uncharacterized protein {ECO:0000313|EMBL:EXB88506.1}
TAIR10AT1G28060.10.0000007Pre-mRNA-splicing factor 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene8607959586080017+
GWHAAZE00000002mRNA8607959586080017+
GWHAAZE00000002exon8607959586080017+
GWHAAZE00000002CDS8607959586080017+
Transcript Sequence

Network for GWHGAAZE008642

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K12843PRPF3, PRP3 Spliceosome map03040

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.220
SRR3591708Shoot apex0.995
SRR3591709Stem0.141
SRR3591710White floral bud0.000
SRR3591711White flower0.000
SRR3591712Green floral bud0.000
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 5.936
SRR8316896Juvenile bud stage 7.989
SRR8316897Juvenile bud stage 0.818
SRR8316894Third green stage 1.966
SRR8316900Third green stage 6.873
SRR8316901Third green stage 4.199
SRR8316898Complete white stage 1.241
SRR8316899Complete white stage 3.557
SRR8316903Complete white stage 1.562
SRR8316902Silver flowering stage0.895
SRR8316904Silver flowering stage1.373
SRR8316905Silver flowering stage0.323
SRR8316906Gold flowering stage 1.792
SRR8316907Gold flowering stage 2.598
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control6.436
SRR6706287Light intensity 50%6.975
SRR6706288Light intensity 20%6.408
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.433
CNS0095593Slightly white alabastrum(diploid) 26.932
CNS0095594Slightly white alabastrum(diploid) 35.826
CNS0095595Whole white alabastrum(diploid) 25.490
CNS0095596Whole white alabastrum(diploid) 35.958
CNS0095597Whole white alabastrum(diploid) 44.297
CNS0095598Silvery flower (diploied) 12.807
CNS0095599Silvery flower (diploied) 26.301
CNS0095600Silvery flower (diploied) 33.889
CNS0095601Golden flower (diploid) 14.804
CNS0095602Golden flower (diploid) 22.319
CNS0095603Golden flower (diploid) 32.720
CNS0095604Slightly white alabastrum(tetraploid) 10.000
CNS0095605Slightly white alabastrum(tetraploid) 20.006
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 10.109
CNS0095608Whole white alabastrum(tetraploid) 20.153
CNS0095609Whole white alabastrum(tetraploid) 30.007
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.000
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.033
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 111.341
CRR073298Stem 29.352
CRR073299Stem 310.078
CRR073300Leaf 113.050
CRR073301Leaf 29.795
CRR073302Leaf 39.969
CRR073303Juvenile bud 112.466
CRR073304Juvenile bud 26.526
CRR073305Juvenile bud 36.157
CRR073306Third green 11.958
CRR073307Third green 21.752
CRR073308Third green 33.793
CRR073309Second white 10.221
CRR073310Second white 20.704
CRR073311Second white 31.345
CRR073312Silver flowering 10.255
CRR073313Silver flowering 20.000
CRR073314Silver flowering 31.844
CRR073315Gold flowering 15.318
CRR073316Gold flowering 23.243
CRR073317Gold flowering 32.982
CRR073318Tawny withering 14.545
CRR073319Tawny withering 24.561
CRR073320Tawny withering 33.174