Detail information of GWHGAAZE008641


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006845525.13.91954E-37hypothetical protein AMTR_s00019p00169230 [Amborella trichopoda]
trEMBLtr|W1PJE3|W1PJE3_AMBTC1E-37Uncharacterized protein {ECO:0000313|EMBL:ERN07200.1}
TAIR10AT1G28060.11E-28Pre-mRNA-splicing factor 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene8604572486048697-
GWHAAZE00000002mRNA8604572486048697-
GWHAAZE00000002exon8604856886048697-
GWHAAZE00000002exon8604572486046359-
GWHAAZE00000002five_prime_UTR8604860786048697-
GWHAAZE00000002CDS8604856886048606-
GWHAAZE00000002CDS8604572486046359-
Transcript Sequence

Network for GWHGAAZE008641

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06544.13DUF1115882191.50E-24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12843PRPF3, PRP3 Spliceosome map03040

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.206
SRR3591709Stem0.000
SRR3591710White floral bud0.119
SRR3591711White flower0.014
SRR3591712Green floral bud0.111
SRR3591713Yellow flower0.106
SRP173429 SRR8316895Juvenile bud stage 3.231
SRR8316896Juvenile bud stage 2.618
SRR8316897Juvenile bud stage 1.356
SRR8316894Third green stage 1.161
SRR8316900Third green stage 1.282
SRR8316901Third green stage 1.368
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 1.029
SRR8316903Complete white stage 0.644
SRR8316902Silver flowering stage0.096
SRR8316904Silver flowering stage0.218
SRR8316905Silver flowering stage0.072
SRR8316906Gold flowering stage 0.315
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.033
SRP132670SRR6706286Control2.283
SRR6706287Light intensity 50%2.190
SRR6706288Light intensity 20%2.275
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.024
CNS0095593Slightly white alabastrum(diploid) 22.489
CNS0095594Slightly white alabastrum(diploid) 32.292
CNS0095595Whole white alabastrum(diploid) 22.547
CNS0095596Whole white alabastrum(diploid) 33.234
CNS0095597Whole white alabastrum(diploid) 40.562
CNS0095598Silvery flower (diploied) 16.705
CNS0095599Silvery flower (diploied) 22.707
CNS0095600Silvery flower (diploied) 31.301
CNS0095601Golden flower (diploid) 13.731
CNS0095602Golden flower (diploid) 22.382
CNS0095603Golden flower (diploid) 31.984
CNS0095604Slightly white alabastrum(tetraploid) 12.134
CNS0095605Slightly white alabastrum(tetraploid) 21.444
CNS0095606Slightly white alabastrum(tetraploid) 31.133
CNS0095607Whole white alabastrum(tetraploid) 11.322
CNS0095608Whole white alabastrum(tetraploid) 21.883
CNS0095609Whole white alabastrum(tetraploid) 31.004
CNS0095610Silvery flower (tetraploid) 10.414
CNS0095611Silvery flower (tetraploid) 20.354
CNS0095612Silvery flower (tetraploid) 30.048
CNS0095613Golden flower (tetraploid) 10.148
CNS0095614Golden flower (tetraploid) 20.350
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 13.296
CRR073298Stem 23.101
CRR073299Stem 32.440
CRR073300Leaf 10.712
CRR073301Leaf 22.513
CRR073302Leaf 30.988
CRR073303Juvenile bud 10.255
CRR073304Juvenile bud 21.055
CRR073305Juvenile bud 30.203
CRR073306Third green 10.766
CRR073307Third green 20.639
CRR073308Third green 31.775
CRR073309Second white 10.008
CRR073310Second white 20.948
CRR073311Second white 30.144
CRR073312Silver flowering 10.106
CRR073313Silver flowering 20.007
CRR073314Silver flowering 30.700
CRR073315Gold flowering 14.663
CRR073316Gold flowering 25.795
CRR073317Gold flowering 32.573
CRR073318Tawny withering 10.417
CRR073319Tawny withering 20.954
CRR073320Tawny withering 30.809