Detail information of GWHGAAZE008609


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006845525.11.76652E-23hypothetical protein AMTR_s00019p00169230 [Amborella trichopoda]
trEMBLtr|W1PJE3|W1PJE3_AMBTC7E-24Uncharacterized protein {ECO:0000313|EMBL:ERN07200.1}
TAIR10AT1G28060.13E-13Pre-mRNA-splicing factor 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene8468043784680911+
GWHAAZE00000002mRNA8468043784680911+
GWHAAZE00000002exon8468043784680751+
GWHAAZE00000002exon8468081684680911+
GWHAAZE00000002CDS8468043784680751+
GWHAAZE00000002CDS8468081684680911+
Transcript Sequence

Network for GWHGAAZE008609

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06544.13DUF1115261113.90E-16
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12843PRPF3, PRP3 Spliceosome map03040

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.096
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.236
SRR3591709Stem1.008
SRR3591710White floral bud2.621
SRR3591711White flower0.081
SRR3591712Green floral bud8.269
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.183
SRR8316896Juvenile bud stage 0.252
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.003
SRR8316900Third green stage 0.577
SRR8316901Third green stage 0.249
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.000
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.207
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.043
SRR8316906Gold flowering stage 0.324
SRR8316907Gold flowering stage 0.153
SRR8316908Gold flowering stage 0.169
SRP132670SRR6706286Control0.255
SRR6706287Light intensity 50%0.190
SRR6706288Light intensity 20%0.000
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.517
CNS0095593Slightly white alabastrum(diploid) 20.486
CNS0095594Slightly white alabastrum(diploid) 30.080
CNS0095595Whole white alabastrum(diploid) 20.402
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.000
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.000
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.000
CNS0095603Golden flower (diploid) 30.000
CNS0095604Slightly white alabastrum(tetraploid) 110.421
CNS0095605Slightly white alabastrum(tetraploid) 29.740
CNS0095606Slightly white alabastrum(tetraploid) 30.115
CNS0095607Whole white alabastrum(tetraploid) 110.569
CNS0095608Whole white alabastrum(tetraploid) 210.447
CNS0095609Whole white alabastrum(tetraploid) 35.990
CNS0095610Silvery flower (tetraploid) 10.066
CNS0095611Silvery flower (tetraploid) 20.110
CNS0095612Silvery flower (tetraploid) 30.508
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.079
CNS0095615Golden flower (tetraploid) 30.720
CRA001975CRR073297Stem 10.035
CRR073298Stem 20.026
CRR073299Stem 30.213
CRR073300Leaf 10.433
CRR073301Leaf 20.110
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.337
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.000
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000