Detail information of GWHGAAZE008603


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006845525.12.1966E-35hypothetical protein AMTR_s00019p00169230 [Amborella trichopoda]
trEMBLtr|K7N5D1|K7N5D1_SOYBN4E-36Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G38600.2}
TAIR10AT1G28060.15E-25Pre-mRNA-splicing factor 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene8428946384290107+
GWHAAZE00000002mRNA8428946384290107+
GWHAAZE00000002exon8428946384290107+
GWHAAZE00000002CDS8428946384290107+
Transcript Sequence

Network for GWHGAAZE008603

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06544.13DUF1115852083.60E-26
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12843PRPF3, PRP3 Spliceosome map03040

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.329
SRR3591706second leaf0.000
SRR3591707mature leaf0.129
SRR3591708Shoot apex0.177
SRR3591709Stem0.042
SRR3591710White floral bud0.000
SRR3591711White flower0.000
SRR3591712Green floral bud0.143
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 2.554
SRR8316896Juvenile bud stage 3.324
SRR8316897Juvenile bud stage 0.741
SRR8316894Third green stage 0.357
SRR8316900Third green stage 1.008
SRR8316901Third green stage 1.190
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.000
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.111
SRR8316904Silver flowering stage0.259
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.289
SRR6706287Light intensity 50%0.270
SRR6706288Light intensity 20%0.488
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.202
CNS0095593Slightly white alabastrum(diploid) 21.731
CNS0095594Slightly white alabastrum(diploid) 35.833
CNS0095595Whole white alabastrum(diploid) 22.922
CNS0095596Whole white alabastrum(diploid) 31.952
CNS0095597Whole white alabastrum(diploid) 45.224
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.000
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.116
CNS0095603Golden flower (diploid) 30.000
CNS0095604Slightly white alabastrum(tetraploid) 15.517
CNS0095605Slightly white alabastrum(tetraploid) 24.199
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 14.335
CNS0095608Whole white alabastrum(tetraploid) 24.187
CNS0095609Whole white alabastrum(tetraploid) 33.164
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.060
CNS0095612Silvery flower (tetraploid) 30.106
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.086
CRA001975CRR073297Stem 14.302
CRR073298Stem 20.918
CRR073299Stem 31.325
CRR073300Leaf 10.671
CRR073301Leaf 20.933
CRR073302Leaf 30.606
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.393
CRR073305Juvenile bud 30.008
CRR073306Third green 10.000
CRR073307Third green 20.580
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.164
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.220
CRR073316Gold flowering 20.011
CRR073317Gold flowering 30.068
CRR073318Tawny withering 10.021
CRR073319Tawny withering 20.051
CRR073320Tawny withering 30.040