Detail information of GWHGAAZE008602


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006845525.12.24101E-21hypothetical protein AMTR_s00019p00169230 [Amborella trichopoda]
trEMBLtr|W1PJE3|W1PJE3_AMBTC8E-22Uncharacterized protein {ECO:0000313|EMBL:ERN07200.1}
TAIR10AT1G28060.12E-13Pre-mRNA-splicing factor 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene8425981684262726-
GWHAAZE00000002mRNA8425981684262726-
GWHAAZE00000002exon8425981684260367-
GWHAAZE00000002exon8426267984262726-
GWHAAZE00000002five_prime_UTR8426271884262726-
GWHAAZE00000002CDS8426267984262717-
GWHAAZE00000002CDS8425981684260367-
Transcript Sequence

Network for GWHGAAZE008602

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06544.13DUF1115881955.30E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12843PRPF3, PRP3 Spliceosome map03040

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.501
SRR3591706second leaf0.583
SRR3591707mature leaf0.241
SRR3591708Shoot apex2.151
SRR3591709Stem1.539
SRR3591710White floral bud0.326
SRR3591711White flower0.000
SRR3591712Green floral bud0.181
SRR3591713Yellow flower0.311
SRP173429 SRR8316895Juvenile bud stage 3.115
SRR8316896Juvenile bud stage 5.587
SRR8316897Juvenile bud stage 1.062
SRR8316894Third green stage 1.339
SRR8316900Third green stage 1.801
SRR8316901Third green stage 1.474
SRR8316898Complete white stage 0.072
SRR8316899Complete white stage 0.974
SRR8316903Complete white stage 0.426
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.179
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.024
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.042
SRP132670SRR6706286Control1.932
SRR6706287Light intensity 50%2.132
SRR6706288Light intensity 20%1.710
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.695
CNS0095593Slightly white alabastrum(diploid) 23.527
CNS0095594Slightly white alabastrum(diploid) 35.563
CNS0095595Whole white alabastrum(diploid) 24.515
CNS0095596Whole white alabastrum(diploid) 32.901
CNS0095597Whole white alabastrum(diploid) 43.776
CNS0095598Silvery flower (diploied) 18.775
CNS0095599Silvery flower (diploied) 24.252
CNS0095600Silvery flower (diploied) 31.020
CNS0095601Golden flower (diploid) 15.536
CNS0095602Golden flower (diploid) 21.305
CNS0095603Golden flower (diploid) 31.320
CNS0095604Slightly white alabastrum(tetraploid) 11.815
CNS0095605Slightly white alabastrum(tetraploid) 22.299
CNS0095606Slightly white alabastrum(tetraploid) 31.697
CNS0095607Whole white alabastrum(tetraploid) 12.272
CNS0095608Whole white alabastrum(tetraploid) 21.578
CNS0095609Whole white alabastrum(tetraploid) 31.977
CNS0095610Silvery flower (tetraploid) 10.262
CNS0095611Silvery flower (tetraploid) 20.534
CNS0095612Silvery flower (tetraploid) 30.203
CNS0095613Golden flower (tetraploid) 10.073
CNS0095614Golden flower (tetraploid) 20.649
CNS0095615Golden flower (tetraploid) 30.112
CRA001975CRR073297Stem 15.843
CRR073298Stem 26.421
CRR073299Stem 32.035
CRR073300Leaf 11.515
CRR073301Leaf 22.624
CRR073302Leaf 32.325
CRR073303Juvenile bud 11.172
CRR073304Juvenile bud 20.058
CRR073305Juvenile bud 30.409
CRR073306Third green 10.126
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 13.299
CRR073316Gold flowering 22.935
CRR073317Gold flowering 30.854
CRR073318Tawny withering 10.354
CRR073319Tawny withering 20.788
CRR073320Tawny withering 30.296