Gene detail

Detail information of GWHGAAZE008571

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007199003.1	hypothetical protein PRUPE_ppa000922mg [Prunus persica]
Swissprot	tr\|Q9C587\|RFC1_ARATH	Replication factor C subunit 1
trEMBL	tr\|M5VGU4\|M5VGU4_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ00202.1}
TAIR10	AT5G22010.1	replication factor C1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	83152651	83178454	+
GWHAAZE00000002	mRNA	83152651	83178454	+
GWHAAZE00000002	exon	83152651	83152887	+
GWHAAZE00000002	exon	83153268	83153456	+
GWHAAZE00000002	exon	83153561	83153682	+
GWHAAZE00000002	exon	83155704	83155911	+
GWHAAZE00000002	exon	83158396	83158449	+
GWHAAZE00000002	exon	83164869	83165038	+
GWHAAZE00000002	exon	83167349	83167439	+
GWHAAZE00000002	exon	83170701	83170876	+
GWHAAZE00000002	exon	83170984	83171023	+
GWHAAZE00000002	exon	83172289	83172413	+
GWHAAZE00000002	exon	83173868	83173940	+
GWHAAZE00000002	exon	83174030	83174122	+
GWHAAZE00000002	exon	83175085	83175340	+
GWHAAZE00000002	exon	83177231	83177290	+
GWHAAZE00000002	exon	83177972	83178454	+
GWHAAZE00000002	CDS	83152651	83152887	+
GWHAAZE00000002	CDS	83153268	83153456	+
GWHAAZE00000002	CDS	83153561	83153682	+
GWHAAZE00000002	CDS	83155704	83155911	+
GWHAAZE00000002	CDS	83158396	83158449	+
GWHAAZE00000002	CDS	83164869	83165038	+
GWHAAZE00000002	CDS	83167349	83167439	+
GWHAAZE00000002	CDS	83170701	83170876	+
GWHAAZE00000002	CDS	83170984	83171023	+
GWHAAZE00000002	CDS	83172289	83172413	+
GWHAAZE00000002	CDS	83173868	83173940	+
GWHAAZE00000002	CDS	83174030	83174122	+
GWHAAZE00000002	CDS	83175085	83175340	+
GWHAAZE00000002	CDS	83177231	83177290	+
GWHAAZE00000002	CDS	83177972	83178102	+
GWHAAZE00000002	three_prime_UTR	83178103	83178454	+

Transcript Sequence
>GWHTAAZE008579 ATGAACACTTATTTTAACTCAGCAATTGATCTTGAGAGCCTGAAATATGATTTCATTTTTGATTTCCTAGAAGATCAAGTTGGTGACACTTCAGCAAAGAGTGTAGATATGAAAAGTAAGACCTTGGGCTCCTCTCCTGCAAAGCGGAAAAATCAAGCGACAGAGACTGCTTGGTTACCCTGGACAGAAAAATATAAGCCAAAGGTTCCAAATGACATCATAGGAAATCAGTCACTGGTGAAGCAGCTGCATGATTGGTTGGTACATTGGAATGAGCAGTTCCTGAATACAGGTAGTAAGGAGAAGGGCAAAAAACAGAACACTTCTGTTGCTAAAAAAGCCGTTTTGTTAAGTGGTACACCCGGTATAGGGAAGACTACAACAGCCAAGTTGGTTAGTCAGATGCTTGGCTATGTGACAATTGAGGTTAATGCTAGTGACAGTCGAGGAAAGGCTGATATTAAAATTGACAAAGGTATTGGTGGATGTACCGCAAATTCTGTAAAGGAACTTGTCAGTAACGAAGCCCTGAGTGTTAAGATGGACCGCCCAAAGCAGTCTAAGACTGTATTGATTATGGACGAGGTTGATGGTATGTCTGCTGGAGATAGAGGTGGAGTGGCTGATCTTATTGCTAGCATCAAGATGTCTAAAATACCCATCATCTGTATCTGTAATGACCGCTACAGTCAGAAGCTTAAGAGTCTTGTCAATTACTGCTTACTCCTAAACTTCCGGAAACCTACAAAGCAGCAGATGGGGAAGAGGTTAATGCAAATCGCAAATTCGGAAGGCCTTCAAGTTAATGAGATTGCGCTTGAGGAACTTGCAGAAAGAGTTAATGGAGATATGCGCATGGCTTTGAACCAGTTGCAGTATATGAGTCTCTCCATGAAAGTCATTAAATATGATGACATAAGACAACGCCTCCTTAGCAGTTCAAAGGATGAAGATATTTCTCCCTTTACAGCTGTTGATAAGCTGTTTGGTTATAATGGGGTGAAGTTGCGAATGGATGAAAGATTTGATCTAAGCATGAGTGATCCTGATCTAATCCCTCTTATTGTTCAGGAGAATTATCTCAATTACAAGCCAAGTTCAGCTGGCAAAGACGATGTGAAAAGGATGAACTTGGTTGCCCATGCAGCTGAGTCTATTGGAGATGGGGACATAATTAATGTACAGATTCGAAGATATCGACAGTGGCAGCTCTCCCAGAGTAGCTCCCTTGCGTCTTGTATACTTCCTGCTGCTTTATTACATGGACAAAGGGAGATACTTGAACAGGGAGAACGTAACTTTAATAGGTTTGGTGGATGGCTGGGAAAGAACTCTACAATGGGCAAGAATTACAGGCTTTTGGAGGATATGCATGTTCATTTACTTGCTTCTCGCGGGTCTAATTTGGGGAGGGCAACCTTGAGGCTCGATTATCTTACTCTTCTTTTAAAGAATTTGACTGATCCACTCCGGTTGCTACCCAAGGATGAAGCTGTTGAGAAGGTCGTGGAGTTCATGGATGCCTACTCAATTAACCAGGAAGACTTTGATGCTATAGTGGAGATGTCGAAATTTCAGGGGCACCCAAATCCGATGGATGGGATACCGGCAGCTGTGAAAGGTGCACTTACAAAGGCATACAACAAAGGAAGTAGCTCACGCGTAGTCCGTACTGCAGATTTGATAAACCTTCCTGGAATAAAGAAGGCCCCAAAGAAGCGGATTCAAGCCATGCTTGAACCTTCTGAAGATGCTGATGGTTTAGCAGAGGAGAAGGCTGATGATGCATCTGCAGAAAACGAAGAAGATAACTCTTCAGATACAGAGGGTTTGGAAGGAGCAGCTGATGATGGGAAAAAGGTGCAAATGGATCTCAAAAGTCTTGATTCAAAAGGTATTCAAGTACAATTGGACTTGAAGGGTGAGGGAAAGACAAGTGCAAAGAAGGCACCATCGGGCCGTGGAAGAGGAGGAAGTGCTTCTGCTGAGAAGAAAGCAGCTGCTGCTCCCAAGAGAAAGAGATGAAAGAGTGAATGGGTGAGAGTGATAAACAAAAGAACTGGTGGTGCAACGCTTCTCTTTTTTGGCGATATCCTCTTTTCTGTAATTAGTAGTAGTAGTTAGTTGTGAGGAAGTTTATTTCCCCTTCTGTTTTGGGTTCGTTGGTGGGGATGGATGTTGTTGGTTTGCTGTGTAAAGAAAGCGGAGGGAGTTTGAATCAGGCATATCATTTTGGTTCAATTGCTTCAAGGCAAGGCACGTTTTTGTTTGTCAATTTTATTTGTAATGGTTTCAGTATAAAATTTCCATGCCCAAATGAATGGATTCTGTATGTGAACTAACTTGACACAGGAATCATCTAATTTAAAATGGGAAA

Network for GWHGAAZE008571

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00004.30	AAA	115	227	1.80E-10
PF08519.13	RFC1	386	549	8.60E-45

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10754	RFC1	DNA replication	map03030
		Nucleotide excision repair	map03420
		Mismatch repair	map03430

Gene Ontology

GO term	Ontology	Name
GO:0006260	biological_process	DNA replication
GO:0006281	biological_process	DNA repair
GO:0005663	cellular_component	DNA replication factor C complex
GO:0003689	molecular_function	DNA clamp loader activity
GO:0005524	molecular_function	ATP binding
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	40.139
	SRR3591706	second leaf	25.963
	SRR3591707	mature leaf	24.765
	SRR3591708	Shoot apex	51.255
	SRR3591709	Stem	42.897
	SRR3591710	White floral bud	33.068
	SRR3591711	White flower	38.468
	SRR3591712	Green floral bud	36.270
	SRR3591713	Yellow flower	32.307
SRP173429	SRR8316895	Juvenile bud stage	30.801
	SRR8316896	Juvenile bud stage	45.105
	SRR8316897	Juvenile bud stage	22.262
	SRR8316894	Third green stage	16.157
	SRR8316900	Third green stage	34.471
	SRR8316901	Third green stage	34.985
	SRR8316898	Complete white stage	9.553
	SRR8316899	Complete white stage	34.227
	SRR8316903	Complete white stage	22.676
	SRR8316902	Silver flowering stage	12.982
	SRR8316904	Silver flowering stage	19.026
	SRR8316905	Silver flowering stage	9.447
	SRR8316906	Gold flowering stage	30.642
	SRR8316907	Gold flowering stage	29.686
	SRR8316908	Gold flowering stage	35.306
SRP132670	SRR6706286	Control	21.622
	SRR6706287	Light intensity 50%	22.971
	SRR6706288	Light intensity 20%	23.772
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	38.921
	CNS0095593	Slightly white alabastrum(diploid) 2	38.137
	CNS0095594	Slightly white alabastrum(diploid) 3	37.469
	CNS0095595	Whole white alabastrum(diploid) 2	29.790
	CNS0095596	Whole white alabastrum(diploid) 3	25.555
	CNS0095597	Whole white alabastrum(diploid) 4	27.256
	CNS0095598	Silvery flower (diploied) 1	39.492
	CNS0095599	Silvery flower (diploied) 2	34.191
	CNS0095600	Silvery flower (diploied) 3	30.124
	CNS0095601	Golden flower (diploid) 1	38.840
	CNS0095602	Golden flower (diploid) 2	34.791
	CNS0095603	Golden flower (diploid) 3	31.581
	CNS0095604	Slightly white alabastrum(tetraploid) 1	36.336
	CNS0095605	Slightly white alabastrum(tetraploid) 2	31.957
	CNS0095606	Slightly white alabastrum(tetraploid) 3	50.193
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.185
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.259
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.737
	CNS0095610	Silvery flower (tetraploid) 1	37.548
	CNS0095611	Silvery flower (tetraploid) 2	35.456
	CNS0095612	Silvery flower (tetraploid) 3	31.294
	CNS0095613	Golden flower (tetraploid) 1	23.565
	CNS0095614	Golden flower (tetraploid) 2	35.014
	CNS0095615	Golden flower (tetraploid) 3	29.303
CRA001975	CRR073297	Stem 1	39.425
	CRR073298	Stem 2	37.392
	CRR073299	Stem 3	27.135
	CRR073300	Leaf 1	37.343
	CRR073301	Leaf 2	31.117
	CRR073302	Leaf 3	19.479
	CRR073303	Juvenile bud 1	23.122
	CRR073304	Juvenile bud 2	14.765
	CRR073305	Juvenile bud 3	32.940
	CRR073306	Third green 1	6.040
	CRR073307	Third green 2	6.231
	CRR073308	Third green 3	8.293
	CRR073309	Second white 1	8.369
	CRR073310	Second white 2	10.267
	CRR073311	Second white 3	12.230
	CRR073312	Silver flowering 1	8.976
	CRR073313	Silver flowering 2	10.964
	CRR073314	Silver flowering 3	7.990
	CRR073315	Gold flowering 1	9.517
	CRR073316	Gold flowering 2	13.373
	CRR073317	Gold flowering 3	8.054
	CRR073318	Tawny withering 1	25.604
	CRR073319	Tawny withering 2	25.585
	CRR073320	Tawny withering 3	27.250