Gene detail

Detail information of GWHGAAZE008566

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP40594.1	0	hypothetical protein JCGZ_24593 [Jatropha curcas]
Swissprot	tr\|Q9LYN8\|EXS_ARATH	2E-59	Leucine-rich repeat receptor protein kinase EXS (Precursor)
trEMBL	tr\|A0A067L914\|A0A067L914_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP40594.1}
TAIR10	AT1G55200.1	1E-69	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	82957128	82961976	+
GWHAAZE00000002	mRNA	82957128	82961976	+
GWHAAZE00000002	exon	82957128	82957278	+
GWHAAZE00000002	exon	82958053	82958192	+
GWHAAZE00000002	exon	82958954	82959051	+
GWHAAZE00000002	exon	82959363	82959577	+
GWHAAZE00000002	exon	82959928	82960518	+
GWHAAZE00000002	exon	82960916	82961064	+
GWHAAZE00000002	exon	82961154	82961300	+
GWHAAZE00000002	exon	82961809	82961976	+
GWHAAZE00000002	CDS	82957128	82957278	+
GWHAAZE00000002	CDS	82958053	82958192	+
GWHAAZE00000002	CDS	82958954	82959051	+
GWHAAZE00000002	CDS	82959363	82959577	+
GWHAAZE00000002	CDS	82959928	82960518	+
GWHAAZE00000002	CDS	82960916	82961064	+
GWHAAZE00000002	CDS	82961154	82961300	+
GWHAAZE00000002	CDS	82961809	82961976	+

Transcript Sequence
>GWHTAAZE008574 ATGCCGATGGAAGCTCAAAGGGTGGTGGTGATTCAGGATTCAGCGAGAGGAGTGGATTTGAGCGCAGTCAAATGGATCCTACAAGGCTTTTCAATGAAGCCTGGTGATACGCTCGCCATCGTATCGGTTCTCCACCAGGTTATTAACCCTATGGGTTACAAAAGCAGAGTTGACAGTTCGATGTTTGGAGTGAATCAGAAGATGGTAGAAGATGAGGTTGCAAGGAAGAAGAAAGAATACCAAAACAACTCAGAACTTACTCAGATTTCTAAACTATATGAAGCCCGGAAGGTTGAGTTTAAGATCGAAGTGGATGCAGGACCTTCACCAAAAGAGGTTGGCGTAGAAGCAGCTAAAAGACTAAGTGCAACTTGGGTTATACTTGACAGGCAGATGAAGAAAGACAAGAAATACTTCCTAGAGAAGCTATCATGTGGGATATCAAGGATGAAGCATGATAGCAGCATAGAACAAATAAGAGGCCCAAAAGCAGTAAAAAAAATCAGCAGCGAAAGAAGAATTAGCAGGCAAATAACATATGATGAAATGTTACCGGGATCCCCTGAGGCTGAAGATCTTTTCAGCATTGAACTTTTCCCCAAAATCTCAACTTCAAGCATGGGAAGTACAGAATCCTCCACAAGATCTAGTTTCAGCGAGGGTAAGTTGATAATGAAAGAAGCAAGAGTGAAAAATCAATCTCCATATGCCTATCCGAATGAAGAAGGAAAGAAGGCTCCAATTGAAGTTAATGAGATAAATAAAGATCGCGAACGAACAAACAGCAACAGCGCAAAAGATTTGATCGGATCATTGAAGCCCGAAGAGGTATTAAATGATTCAATAATCTGTTCAATCTGCAAGAAGAAAAGGCCAATGGTTGGGTGTGAAAGAAGTTTTTCTTACAGAGACCTCTTAGATGCTACAAATGAATTTTCAGCCGAGAATTTGATTTCCGAAGGAGGGTATGGTGCTGTTTTCAAAGGGGAGCTAAAAAATACATCGACAGTTGCTGTTAAGAAACAAAAGGAAACAAGTTTTCAAGGGGAAAATAAGTTCAAAAGTGAAATGCAAGCACTCGAGAAAGCCAGACATAAGAATGTGGTGATTCTATTGGGATCATGTTCAGAAGAGGGCCACAGGTTGCTTGTTTATGAGTACATATGCAATGGTTCACTTGACAATCATCTATCAAATCAGAGCAGCCGACTTTTAACATGGGAGGAAAGGTTGAAGATTGCAGTGGGAGCAGCCAGAGGTTTAAACTATCTGCATGAGAACAATATAATCCACAGAGATATAAGGCCGAAGAACATATTACTGACCCATGACCATGAGCCAGTGCTGATTAGCTTTGGACTAGCAAGAACACAAAATAGAACAGAATGGTTCTCGGATAACTGTGTAATGGGGGCATTCGGATATTTGGCTCCAGAATATGCAGAAAGTGGAAAAGCTTCAACAAAAACGGATGTTTACGCATTTGGCGCGGCAAAACCGCTTTTCAAGGAAAGGAAATACTCCGAGTTGATTGACACAAAAATTGTCAATGCCCGCAATGGCTACCAGTTCATATCAATGGTTCAAGTGGCCGAAAAATGTCTCGCCAAGGATCCCCAGAAAAGATTATCAATGGTTGAGGTAATTAAGCTTTGTTAG

Network for GWHGAAZE008566

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	315	549	3.60E-42

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_PERK-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004713	molecular_function	protein tyrosine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.089
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.561
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.084
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.067
	SRR3591712	Green floral bud	0.204
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.045
	SRR8316896	Juvenile bud stage	0.313
	SRR8316897	Juvenile bud stage	0.144
	SRR8316894	Third green stage	0.254
	SRR8316900	Third green stage	1.088
	SRR8316901	Third green stage	0.849
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.405
	SRR6706287	Light intensity 50%	0.356
	SRR6706288	Light intensity 20%	0.221
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.323
	CNS0095593	Slightly white alabastrum(diploid) 2	1.528
	CNS0095594	Slightly white alabastrum(diploid) 3	2.099
	CNS0095595	Whole white alabastrum(diploid) 2	2.512
	CNS0095596	Whole white alabastrum(diploid) 3	3.047
	CNS0095597	Whole white alabastrum(diploid) 4	4.428
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.487
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.213
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.653
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.741
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.014
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.005
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.409
	CRR073301	Leaf 2	0.211
	CRR073302	Leaf 3	0.021
	CRR073303	Juvenile bud 1	0.244
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.035
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.017
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.030
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.017
	CRR073318	Tawny withering 1	0.222
	CRR073319	Tawny withering 2	0.035
	CRR073320	Tawny withering 3	0.000