Gene detail

Detail information of GWHGAAZE008554

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AGE10578.1	0	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [Lonicera japonica]
Swissprot	tr\|P93841\|ISPE_SOLLC	0	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic/chromoplastic (Precursor; Fragment)
trEMBL	tr\|W8CIE7\|W8CIE7_LONJA	0	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000313\|EMBL:AGE10578.1}
TAIR10	AT2G26930.1	7E-139	4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	82548667	82554921	-
GWHAAZE00000002	mRNA	82548667	82554921	-
GWHAAZE00000002	exon	82554484	82554921	-
GWHAAZE00000002	exon	82554277	82554372	-
GWHAAZE00000002	exon	82553755	82553823	-
GWHAAZE00000002	exon	82553372	82553476	-
GWHAAZE00000002	exon	82553228	82553284	-
GWHAAZE00000002	exon	82552660	82552860	-
GWHAAZE00000002	exon	82551004	82551096	-
GWHAAZE00000002	exon	82550758	82550857	-
GWHAAZE00000002	exon	82550192	82550291	-
GWHAAZE00000002	exon	82549559	82549644	-
GWHAAZE00000002	exon	82548667	82548767	-
GWHAAZE00000002	five_prime_UTR	82554697	82554921	-
GWHAAZE00000002	CDS	82554484	82554696	-
GWHAAZE00000002	CDS	82554277	82554372	-
GWHAAZE00000002	CDS	82553755	82553823	-
GWHAAZE00000002	CDS	82553372	82553476	-
GWHAAZE00000002	CDS	82553228	82553284	-
GWHAAZE00000002	CDS	82552660	82552860	-
GWHAAZE00000002	CDS	82551004	82551096	-
GWHAAZE00000002	CDS	82550758	82550857	-
GWHAAZE00000002	CDS	82550192	82550291	-
GWHAAZE00000002	CDS	82549559	82549644	-
GWHAAZE00000002	CDS	82548667	82548767	-

Transcript Sequence
>GWHTAAZE008562 GGTTTCCTTTTCTTTGTCCATTAAAATAATTTGCACGAGACCCACGGAGTTTCATTTTTCTTCATTCTCTCTCTGTGTATGCGTCAGAGACAGAGAGAGAGGCTTTCTCAAATTCAATTCAAAGGCAAATTTATCCTTTCAAATTGTTGACTAATTGTTGTTTTAACTCCTTTCCCCTTTCAAAGTAATTCTCCATTGACACTCCCATAAACTCAAATTATTTCAATGGCTTCCTCTCATTTTCTCTGTGGTCAACACTTATACAGTTCCTCCCATGGTAGAACCAAAATCAGCTCTTTCAAGAAAGGGGGTTTGTTTCAATCTTCTTCTTGTAGGCCAAATGGGTCATTTTCTTTTGATAAGAAAACCCAATATCAAAGAACCCAATTGGTCAAATCCATGGCTGCTGATTCAAAAACTGGAAAAAAACAAGTAGAGATAGTGTATGATCCTGATGAAAAGATGAATAGCTTAGCTGATGAAGTAGATAAGAATGCTGGACTTTCAAGACTCAGTTTGTTTTCTCCTTGTAAGATAAATGTGTTCTTGAGAATAACCAGCAAGAGGGAAGATGGCTTTCATGATTTGGCATCTTTATTCCATGTAATTAGCCTAGGAGATAAAATAAAGTTCTCTTTGGCACCATCGAAATCTAAGGATCGTTTGTCAACAAATGTCCCTGGAGTTCCCCTTGATGATAGCAATTTGATCATAAAAGCGCTTAATCTTTACCGGAAAAAGACTGGCAGTGACAAGTTCTTTTGGATTCATCTTGATAAAAAGGTGCCTACTGGGGCTGGACTTGGAGGTGGAAGTAGCAATGCCGCCACTGCTCTGTGGGCAGCAAATCAATTCAGCGGTGGTCTTGCCTCTGAAAAAGAACTTCAAGAATGGTCTGGTGAGATTGGTTCGGATGTTCCCTTCTTTTTTTCTCGTGGAGCTGCCTATTGTACTGGTAGAGGTGAGGTTGTTGAAGATGTAACCCTGCCTATAGGTTTTGATGTTCCAATGGTTCTCATAAAGCCTCCAGAGGCATGCTCCACAGCTGAAGTTTATAGGCGTTTTAGGTTGGATCAAACTAGTAACATTGATCCTCAAACCTTGCTGGAGAAGATCTCATTGAATGGAATTTCGCCAGACGTTTGTGTCAATGATTTGGAACCTCCTGCATTTGAAGTCCTCCCATCTCTTAAAAGATTAAAGCAGCGCATAATTGCTGCAGGCCGTGGAGAATATGATGCTGTTTTCATGTCCGGAAGTGGAAGCACCATAGTAGGGATCGGTTCTCCAGACCCCCCACAGTTTGTCTATGATGATGAAGATTACAAGGACGTCTTTTTATCAGAAGCGAGCTTCATCACTCGCGCAGAAAATGAGTGGTATACTGAACCATTCTCAACCAATAACGCGTCTGCTCCTTCTGGCCTTTCTTATGCTACTGAGTGA

Network for GWHGAAZE008554

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00288.27	GHMP_kinases_N	181	235	3.70E-07
PF08544.14	GHMP_kinases_C	290	362	4.70E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00919	ispE	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Terpenoid backbone biosynthesis	map00900

Gene Ontology

GO term	Ontology	Name
GO:0016114	biological_process	terpenoid biosynthetic process
GO:0050515	molecular_function	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	41.140
	SRR3591706	second leaf	82.249
	SRR3591707	mature leaf	54.424
	SRR3591708	Shoot apex	59.724
	SRR3591709	Stem	28.453
	SRR3591710	White floral bud	266.756
	SRR3591711	White flower	330.239
	SRR3591712	Green floral bud	42.542
	SRR3591713	Yellow flower	364.543
SRP173429	SRR8316895	Juvenile bud stage	29.825
	SRR8316896	Juvenile bud stage	30.393
	SRR8316897	Juvenile bud stage	15.108
	SRR8316894	Third green stage	10.578
	SRR8316900	Third green stage	33.039
	SRR8316901	Third green stage	32.340
	SRR8316898	Complete white stage	67.340
	SRR8316899	Complete white stage	40.450
	SRR8316903	Complete white stage	123.967
	SRR8316902	Silver flowering stage	215.256
	SRR8316904	Silver flowering stage	285.511
	SRR8316905	Silver flowering stage	160.677
	SRR8316906	Gold flowering stage	639.054
	SRR8316907	Gold flowering stage	520.764
	SRR8316908	Gold flowering stage	527.400
SRP132670	SRR6706286	Control	21.138
	SRR6706287	Light intensity 50%	22.515
	SRR6706288	Light intensity 20%	19.896
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	39.658
	CNS0095593	Slightly white alabastrum(diploid) 2	37.957
	CNS0095594	Slightly white alabastrum(diploid) 3	43.118
	CNS0095595	Whole white alabastrum(diploid) 2	46.714
	CNS0095596	Whole white alabastrum(diploid) 3	21.095
	CNS0095597	Whole white alabastrum(diploid) 4	35.853
	CNS0095598	Silvery flower (diploied) 1	95.192
	CNS0095599	Silvery flower (diploied) 2	106.861
	CNS0095600	Silvery flower (diploied) 3	367.880
	CNS0095601	Golden flower (diploid) 1	154.158
	CNS0095602	Golden flower (diploid) 2	327.335
	CNS0095603	Golden flower (diploid) 3	302.325
	CNS0095604	Slightly white alabastrum(tetraploid) 1	34.158
	CNS0095605	Slightly white alabastrum(tetraploid) 2	45.459
	CNS0095606	Slightly white alabastrum(tetraploid) 3	82.725
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.211
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.492
	CNS0095609	Whole white alabastrum(tetraploid) 3	33.864
	CNS0095610	Silvery flower (tetraploid) 1	337.303
	CNS0095611	Silvery flower (tetraploid) 2	465.235
	CNS0095612	Silvery flower (tetraploid) 3	763.478
	CNS0095613	Golden flower (tetraploid) 1	506.321
	CNS0095614	Golden flower (tetraploid) 2	486.152
	CNS0095615	Golden flower (tetraploid) 3	1341.209
CRA001975	CRR073297	Stem 1	31.488
	CRR073298	Stem 2	27.533
	CRR073299	Stem 3	33.294
	CRR073300	Leaf 1	24.910
	CRR073301	Leaf 2	27.948
	CRR073302	Leaf 3	22.538
	CRR073303	Juvenile bud 1	29.347
	CRR073304	Juvenile bud 2	33.743
	CRR073305	Juvenile bud 3	28.280
	CRR073306	Third green 1	446.729
	CRR073307	Third green 2	278.698
	CRR073308	Third green 3	328.099
	CRR073309	Second white 1	562.643
	CRR073310	Second white 2	646.782
	CRR073311	Second white 3	663.445
	CRR073312	Silver flowering 1	664.466
	CRR073313	Silver flowering 2	530.233
	CRR073314	Silver flowering 3	474.979
	CRR073315	Gold flowering 1	46.756
	CRR073316	Gold flowering 2	52.345
	CRR073317	Gold flowering 3	44.444
	CRR073318	Tawny withering 1	54.664
	CRR073319	Tawny withering 2	46.016
	CRR073320	Tawny withering 3	67.216