Detail information of GWHGAAZE008550


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008229055.16.81903E-82PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Prunus mume]
Swissprottr|Q9SIV2|PSD2A_ARATH2E-6926S proteasome non-ATPase regulatory subunit 2 homolog A
trEMBLtr|M5VGN0|M5VGN0_PRUPE1E-79Uncharacterized protein {ECO:0000313|EMBL:EMJ00127.1}
TAIR10AT2G20580.12E-5426S proteasome regulatory subunit S2 1A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene8237605582382679-
GWHAAZE00000002mRNA8237605582382679-
GWHAAZE00000002exon8238265382382679-
GWHAAZE00000002exon8238096082381112-
GWHAAZE00000002exon8238016482380271-
GWHAAZE00000002exon8237932382379422-
GWHAAZE00000002exon8237833682378559-
GWHAAZE00000002exon8237809782378221-
GWHAAZE00000002exon8237766782377769-
GWHAAZE00000002exon8237682982376924-
GWHAAZE00000002exon8237659082376748-
GWHAAZE00000002exon8237605582376138-
GWHAAZE00000002CDS8238265382382679-
GWHAAZE00000002CDS8238096082381112-
GWHAAZE00000002CDS8238016482380271-
GWHAAZE00000002CDS8237932382379422-
GWHAAZE00000002CDS8237833682378559-
GWHAAZE00000002CDS8237809782378221-
GWHAAZE00000002CDS8237766782377769-
GWHAAZE00000002CDS8237682982376924-
GWHAAZE00000002CDS8237659082376748-
GWHAAZE00000002CDS8237605582376138-
Transcript Sequence

Network for GWHGAAZE008550

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03028PSMD2, RPN1 Proteasome map03050

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.350
SRR3591706second leaf1.716
SRR3591707mature leaf2.247
SRR3591708Shoot apex1.477
SRR3591709Stem3.500
SRR3591710White floral bud5.838
SRR3591711White flower6.151
SRR3591712Green floral bud5.863
SRR3591713Yellow flower3.173
SRP173429 SRR8316895Juvenile bud stage 4.372
SRR8316896Juvenile bud stage 6.423
SRR8316897Juvenile bud stage 0.046
SRR8316894Third green stage 2.866
SRR8316900Third green stage 8.196
SRR8316901Third green stage 6.757
SRR8316898Complete white stage 1.989
SRR8316899Complete white stage 5.238
SRR8316903Complete white stage 4.562
SRR8316902Silver flowering stage2.105
SRR8316904Silver flowering stage3.774
SRR8316905Silver flowering stage1.543
SRR8316906Gold flowering stage 4.720
SRR8316907Gold flowering stage 5.124
SRR8316908Gold flowering stage 1.153
SRP132670SRR6706286Control4.493
SRR6706287Light intensity 50%4.778
SRR6706288Light intensity 20%5.435
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.125
CNS0095593Slightly white alabastrum(diploid) 22.816
CNS0095594Slightly white alabastrum(diploid) 31.872
CNS0095595Whole white alabastrum(diploid) 21.841
CNS0095596Whole white alabastrum(diploid) 31.941
CNS0095597Whole white alabastrum(diploid) 42.784
CNS0095598Silvery flower (diploied) 13.044
CNS0095599Silvery flower (diploied) 22.364
CNS0095600Silvery flower (diploied) 35.499
CNS0095601Golden flower (diploid) 12.605
CNS0095602Golden flower (diploid) 23.290
CNS0095603Golden flower (diploid) 33.923
CNS0095604Slightly white alabastrum(tetraploid) 11.279
CNS0095605Slightly white alabastrum(tetraploid) 20.515
CNS0095606Slightly white alabastrum(tetraploid) 31.970
CNS0095607Whole white alabastrum(tetraploid) 11.097
CNS0095608Whole white alabastrum(tetraploid) 20.600
CNS0095609Whole white alabastrum(tetraploid) 30.078
CNS0095610Silvery flower (tetraploid) 10.550
CNS0095611Silvery flower (tetraploid) 20.279
CNS0095612Silvery flower (tetraploid) 30.293
CNS0095613Golden flower (tetraploid) 10.328
CNS0095614Golden flower (tetraploid) 20.085
CNS0095615Golden flower (tetraploid) 30.235
CRA001975CRR073297Stem 14.950
CRR073298Stem 24.868
CRR073299Stem 30.796
CRR073300Leaf 15.242
CRR073301Leaf 24.899
CRR073302Leaf 31.689
CRR073303Juvenile bud 11.825
CRR073304Juvenile bud 20.006
CRR073305Juvenile bud 31.306
CRR073306Third green 10.239
CRR073307Third green 20.034
CRR073308Third green 30.223
CRR073309Second white 10.098
CRR073310Second white 20.433
CRR073311Second white 30.138
CRR073312Silver flowering 10.243
CRR073313Silver flowering 20.077
CRR073314Silver flowering 30.301
CRR073315Gold flowering 10.884
CRR073316Gold flowering 20.651
CRR073317Gold flowering 30.072
CRR073318Tawny withering 11.026
CRR073319Tawny withering 21.205
CRR073320Tawny withering 30.495