Detail information of GWHGAAZE008546


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010656678.10PREDICTED: SART-1 family protein DOT2 [Vitis vinifera]
Swissprottr|Q9LFE0|DOT2_ARATH0SART-1 family protein DOT2 {ECO:0000305}
trEMBLtr|D7UD56|D7UD56_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI40671.3}
TAIR10AT5G16780.17E-173SART-1 family

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene8196560581980514-
GWHAAZE00000002mRNA8196560581980514-
GWHAAZE00000002exon8198040981980514-
GWHAAZE00000002exon8198020981980266-
GWHAAZE00000002exon8197977281979949-
GWHAAZE00000002exon8197890681978943-
GWHAAZE00000002exon8197785981978000-
GWHAAZE00000002exon8197538381975474-
GWHAAZE00000002exon8197523481975300-
GWHAAZE00000002exon8197509081975149-
GWHAAZE00000002exon8197416181974779-
GWHAAZE00000002exon8197235681972717-
GWHAAZE00000002exon8197132781971547-
GWHAAZE00000002exon8196828681968370-
GWHAAZE00000002exon8196560581965679-
GWHAAZE00000002CDS8198040981980514-
GWHAAZE00000002CDS8198020981980266-
GWHAAZE00000002CDS8197977281979949-
GWHAAZE00000002CDS8197890681978943-
GWHAAZE00000002CDS8197785981978000-
GWHAAZE00000002CDS8197538381975474-
GWHAAZE00000002CDS8197523481975300-
GWHAAZE00000002CDS8197509081975149-
GWHAAZE00000002CDS8197416181974779-
GWHAAZE00000002CDS8197235681972717-
GWHAAZE00000002CDS8197132781971547-
GWHAAZE00000002CDS8196828681968370-
GWHAAZE00000002CDS8196560581965679-
Transcript Sequence

Network for GWHGAAZE008546

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03343.14SART-11915365.40E-29
PF03343.14SART-15626083.50E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11984SART1, HAF, SNU66 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0000398biological_processmRNA splicing, via spliceosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf20.143
SRR3591706second leaf11.579
SRR3591707mature leaf9.585
SRR3591708Shoot apex19.326
SRR3591709Stem16.902
SRR3591710White floral bud21.017
SRR3591711White flower23.620
SRR3591712Green floral bud22.095
SRR3591713Yellow flower14.818
SRP173429 SRR8316895Juvenile bud stage 13.286
SRR8316896Juvenile bud stage 20.882
SRR8316897Juvenile bud stage 10.105
SRR8316894Third green stage 8.045
SRR8316900Third green stage 20.016
SRR8316901Third green stage 23.575
SRR8316898Complete white stage 5.244
SRR8316899Complete white stage 17.917
SRR8316903Complete white stage 14.275
SRR8316902Silver flowering stage9.236
SRR8316904Silver flowering stage12.457
SRR8316905Silver flowering stage6.111
SRR8316906Gold flowering stage 14.705
SRR8316907Gold flowering stage 18.063
SRR8316908Gold flowering stage 21.243
SRP132670SRR6706286Control6.345
SRR6706287Light intensity 50%6.551
SRR6706288Light intensity 20%6.499
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.839
CNS0095593Slightly white alabastrum(diploid) 217.687
CNS0095594Slightly white alabastrum(diploid) 319.029
CNS0095595Whole white alabastrum(diploid) 215.256
CNS0095596Whole white alabastrum(diploid) 314.986
CNS0095597Whole white alabastrum(diploid) 412.656
CNS0095598Silvery flower (diploied) 116.947
CNS0095599Silvery flower (diploied) 214.224
CNS0095600Silvery flower (diploied) 314.472
CNS0095601Golden flower (diploid) 112.797
CNS0095602Golden flower (diploid) 213.817
CNS0095603Golden flower (diploid) 314.355
CNS0095604Slightly white alabastrum(tetraploid) 121.010
CNS0095605Slightly white alabastrum(tetraploid) 217.773
CNS0095606Slightly white alabastrum(tetraploid) 328.619
CNS0095607Whole white alabastrum(tetraploid) 115.825
CNS0095608Whole white alabastrum(tetraploid) 212.605
CNS0095609Whole white alabastrum(tetraploid) 318.673
CNS0095610Silvery flower (tetraploid) 123.119
CNS0095611Silvery flower (tetraploid) 218.106
CNS0095612Silvery flower (tetraploid) 316.384
CNS0095613Golden flower (tetraploid) 114.759
CNS0095614Golden flower (tetraploid) 218.457
CNS0095615Golden flower (tetraploid) 315.246
CRA001975CRR073297Stem 122.585
CRR073298Stem 218.581
CRR073299Stem 313.532
CRR073300Leaf 120.363
CRR073301Leaf 218.664
CRR073302Leaf 310.482
CRR073303Juvenile bud 112.768
CRR073304Juvenile bud 29.007
CRR073305Juvenile bud 316.380
CRR073306Third green 17.152
CRR073307Third green 27.727
CRR073308Third green 39.357
CRR073309Second white 16.435
CRR073310Second white 210.323
CRR073311Second white 310.847
CRR073312Silver flowering 18.673
CRR073313Silver flowering 27.484
CRR073314Silver flowering 37.426
CRR073315Gold flowering 13.302
CRR073316Gold flowering 26.810
CRR073317Gold flowering 31.851
CRR073318Tawny withering 111.040
CRR073319Tawny withering 213.056
CRR073320Tawny withering 312.071