Detail information of GWHGAAZE008545


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002276189.10PREDICTED: protein SMG7 [Vitis vinifera]
Swissprottr|A9QM73|SMG7_ARATH0Protein SMG7
trEMBLtr|F6HA45|F6HA45_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB49053.1}
TAIR10AT5G19400.33E-175Telomerase activating protein Est1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene8183745281842964-
GWHAAZE00000002mRNA8183745281842964-
GWHAAZE00000002exon8184235681842964-
GWHAAZE00000002exon8184177681841898-
GWHAAZE00000002exon8183969781839845-
GWHAAZE00000002exon8183745281839219-
GWHAAZE00000002CDS8184235681842964-
GWHAAZE00000002CDS8184177681841898-
GWHAAZE00000002CDS8183969781839845-
GWHAAZE00000002CDS8183745281839219-
Transcript Sequence

Network for GWHGAAZE008545

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF10374.10EST1511701.70E-14
PF10373.10EST1_DNA_bind1834892.10E-61
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14409SMG7, EST1C mRNA surveillance pathway map03015

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf15.088
SRR3591706second leaf8.499
SRR3591707mature leaf14.349
SRR3591708Shoot apex12.224
SRR3591709Stem15.711
SRR3591710White floral bud16.956
SRR3591711White flower16.271
SRR3591712Green floral bud15.201
SRR3591713Yellow flower12.819
SRP173429 SRR8316895Juvenile bud stage 8.381
SRR8316896Juvenile bud stage 10.447
SRR8316897Juvenile bud stage 6.100
SRR8316894Third green stage 6.307
SRR8316900Third green stage 11.816
SRR8316901Third green stage 13.063
SRR8316898Complete white stage 5.273
SRR8316899Complete white stage 17.395
SRR8316903Complete white stage 10.011
SRR8316902Silver flowering stage5.055
SRR8316904Silver flowering stage9.183
SRR8316905Silver flowering stage4.158
SRR8316906Gold flowering stage 12.621
SRR8316907Gold flowering stage 11.795
SRR8316908Gold flowering stage 14.271
SRP132670SRR6706286Control16.578
SRR6706287Light intensity 50%17.212
SRR6706288Light intensity 20%17.952
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.132
CNS0095593Slightly white alabastrum(diploid) 24.665
CNS0095594Slightly white alabastrum(diploid) 34.919
CNS0095595Whole white alabastrum(diploid) 24.332
CNS0095596Whole white alabastrum(diploid) 33.347
CNS0095597Whole white alabastrum(diploid) 44.721
CNS0095598Silvery flower (diploied) 18.618
CNS0095599Silvery flower (diploied) 25.868
CNS0095600Silvery flower (diploied) 318.089
CNS0095601Golden flower (diploid) 15.638
CNS0095602Golden flower (diploid) 218.712
CNS0095603Golden flower (diploid) 317.794
CNS0095604Slightly white alabastrum(tetraploid) 18.538
CNS0095605Slightly white alabastrum(tetraploid) 26.622
CNS0095606Slightly white alabastrum(tetraploid) 314.107
CNS0095607Whole white alabastrum(tetraploid) 14.306
CNS0095608Whole white alabastrum(tetraploid) 23.423
CNS0095609Whole white alabastrum(tetraploid) 310.133
CNS0095610Silvery flower (tetraploid) 116.425
CNS0095611Silvery flower (tetraploid) 215.580
CNS0095612Silvery flower (tetraploid) 316.840
CNS0095613Golden flower (tetraploid) 15.989
CNS0095614Golden flower (tetraploid) 212.484
CNS0095615Golden flower (tetraploid) 314.881
CRA001975CRR073297Stem 115.860
CRR073298Stem 213.697
CRR073299Stem 311.840
CRR073300Leaf 113.558
CRR073301Leaf 213.372
CRR073302Leaf 312.225
CRR073303Juvenile bud 110.617
CRR073304Juvenile bud 211.125
CRR073305Juvenile bud 317.933
CRR073306Third green 16.045
CRR073307Third green 24.989
CRR073308Third green 36.523
CRR073309Second white 17.512
CRR073310Second white 210.085
CRR073311Second white 311.508
CRR073312Silver flowering 19.790
CRR073313Silver flowering 29.629
CRR073314Silver flowering 37.963
CRR073315Gold flowering 110.710
CRR073316Gold flowering 222.265
CRR073317Gold flowering 313.654
CRR073318Tawny withering 112.184
CRR073319Tawny withering 210.894
CRR073320Tawny withering 310.884