Gene detail

Detail information of GWHGAAZE008541

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010656678.1	PREDICTED: SART-1 family protein DOT2 [Vitis vinifera]
Swissprot	tr\|Q9LFE0\|DOT2_ARATH	SART-1 family protein DOT2 {ECO:0000305}
trEMBL	tr\|D7UD56\|D7UD56_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI40671.3}
TAIR10	AT5G16780.1	SART-1 family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	81347452	81366466	+
GWHAAZE00000002	mRNA	81347452	81366466	+
GWHAAZE00000002	exon	81347452	81347750	+
GWHAAZE00000002	exon	81347852	81348046	+
GWHAAZE00000002	exon	81353997	81354138	+
GWHAAZE00000002	exon	81354240	81354294	+
GWHAAZE00000002	exon	81356313	81356426	+
GWHAAZE00000002	exon	81356530	81356626	+
GWHAAZE00000002	exon	81356709	81356775	+
GWHAAZE00000002	exon	81356860	81356919	+
GWHAAZE00000002	exon	81357224	81357842	+
GWHAAZE00000002	exon	81359286	81359600	+
GWHAAZE00000002	exon	81360404	81360692	+
GWHAAZE00000002	exon	81363652	81363778	+
GWHAAZE00000002	exon	81366392	81366466	+
GWHAAZE00000002	CDS	81347452	81347750	+
GWHAAZE00000002	CDS	81347852	81348046	+
GWHAAZE00000002	CDS	81353997	81354138	+
GWHAAZE00000002	CDS	81354240	81354294	+
GWHAAZE00000002	CDS	81356313	81356426	+
GWHAAZE00000002	CDS	81356530	81356626	+
GWHAAZE00000002	CDS	81356709	81356775	+
GWHAAZE00000002	CDS	81356860	81356919	+
GWHAAZE00000002	CDS	81357224	81357842	+
GWHAAZE00000002	CDS	81359286	81359600	+
GWHAAZE00000002	CDS	81360404	81360692	+
GWHAAZE00000002	CDS	81363652	81363778	+
GWHAAZE00000002	CDS	81366392	81366466	+

Transcript Sequence
>GWHTAAZE008549 ATGAGGGATCAAGGTGATTCTCCAAGGAGAGAGAGGTGGGAGGGAGGCTATGATGATCTTGAAGAGAATGACGGAGAGAAATCAAGAGATTTAGGCAAGCATCACAGTAAGGATAAAAGCAAGAGTAGTAGAAGCGAGGAGAAAGATCACAGAAGTAGGGACCGAGAACGGGCAAAGAGTAGTGATATTCCAAAAGAGAGAGAGAAAGATAAAGACACAAAAGATTCAGAAAAAGATCGAGTCTCCAGTAGAAATAAGAGGAAAGACGGTAGGGATGAGCGAAGGATAGGACTCGACAGGAGGAAGGATCTAGGGAGGGATAATAAGTCAAAAGTAGATGGTGAAGAAGGTCAGTATAGGGATGTCATGAAGCAGGGGTCAGGCTCTCATCATGACAGGGATAGCATAAAAAGCACCAAGCATGAACAAAATGCCGAGGGTGAACCTAGTGCTTCCCACTTGTCAGCGGCTGAGCTCGAGGAGCGCATTCTGAAGGTTAAGGAAGAAAGATTGAAGAAAAAGTCTGAAGGTGATTCGGAGGTTTTAGCATGGGTTAGTAAGAGCCGCAAGCTTGAGGAGAAAAGGAACGTTGAGAAGGAGAAAGCCTTGCAGCTATCGAAGGTTTTTGAGGAGCAGGACGATATCATTCAAGGAGAAAGTGATGATGAGGAGACAGCCCAGCGTACTGCTCAGGACCTATCGGGGGTTAAAGTTCTTCATGGGCTTGACAAAGTAATTGAAGGTGGGGCAGTTGTTTTGACACTCAAAGATCAGAGCATACTTGCCAATGGTGACATCAATGAAGATGTTGATATGCTTGAAAATGTGGAAATTGGCGAGCAGAAGCAGAGGAGCGAGGCTTATAAGGCTGCGAAAAAGAAAACGGGGATTTATGTTGACAAGTTTAATGATGAGCCTGGTTCTGAGAAGAAAATTCTTCCACAGTATGATGATCCGGTTGCAGATGAGGGAGTTACTTTGGATGCCAATGGACGATTCACCGGAGAAGCAGAGAAGAAACTGGAGGAGCTCCGTAAAAGGATAGAGGGTGTTCGCCCACGCAATCACGTTGAAGATCTTGTTTCAATGGGGAAGACCTCATCAGACTATTATACTCACGAAGAAATGCTTCAGTTTAAAAAGCCTAAGAAAAAGAAGTCTTTGAGAAAGAAACATAAGCTGGATTTGAATGCCCTTGAAGCAGAAGCCGTCACTGCAGGATTGGGGGTCGGTGATCTCGGCTCTCGTAATGATGGGAAGAGGCAAGCCCTTAAAGAGGAACAAGAGAGATTAGAGGCCGAAAAGAGAAGCACTGCTTACCAATCAGCATATGCTAGGGCAGATGAGGCATCTAAAGCGCTACGAATAGAGAAAACTCTCCCTACACAAATGGAGGAAGATGATACTCCAGTTTTTGATGATGACGATGAAGATCTCCGTAAATCTTTGGATAGGGCGAGAAGGTTAGCTCTGAAAAAGAAAGACGATGGAGGGGCTACTGGTCCAACTTCATTTGCTCTCCTGGCTTCTTCCACTAGCAATAATTCCACCACCGACAATGACAACAATGTACCTGGAGAGTCACAAGAAAATAAAGTTGTTTTCACAGAGATGGAAGAGTTTGTTTGGGGTCTCCAGCTTGATGAAGAAGCTCATAAGCCTGATGGTGAAGATGTTTTTATGGAGGAAGATGTAGTACCAAAAATCTCTGGTCAAGATCAAAAAGACGATGATGGTGGCTGGACTGAGGTGAAAGAGACTACTGAAGAAGAAGCCCCCACAAATCAGGATAAAGAGGAGATAGTCCCAGATGAAACAATTCATGAAGTTGCTGTTGGAAAGGGATTATCAGGCGCACTAAGGCTACTTAAAGACCGAGGATCACTTGATCAAGGTATTGAATGGGGTGGTCGGAACATGGACAAGAAAAAAAGCAAACTTGTTGGGATTTATGAGAACGATGTTTTTAACCTTGAAGCTAGGCATTCTCTTCCTGTTAACTTATTAAAGTTCTCCCCCTGTTTTTACCAGTTGACTCCGAAAGAATCCTTCAGGCTGCTTTCACATAAATTTCACGGAAAGGGTCCTGGGAAAATGAAACAAGAAAAGCGCATGAGGCAATATGAGGAGGAGCAGAAGGTTAAACAAATGAGGAATTCAGATACACCATCATTATCTGCGGAGAGGATGAGGGATGCTCAGGCTAAAATGAAGACGCCCTATCTTGTTCTTAGCGGGAATGTCAAACCCGGGCAAACAAGTGATCCTAGAAGTGGTTTCGCTACTGTTGAGAAGGACTTCCCTGGTGGCTTGACACCTATGCTTGGAGACAGGAAGGTGAGTGCAATTAATAACCCTGCTTTCTTTTTTTGTGGTTCGGTTGAACACTTCTTGGGAATAAAGCGGAAGTCCGATGCTGGGGATATGGGCCCACCAAAGAAACCTAAACCGTGA

Network for GWHGAAZE008541

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03343.14	SART-1	141	632	1.20E-50
PF03343.14	SART-1	677	711	1.80E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11984	SART1, HAF, SNU66	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0000398	biological_process	mRNA splicing, via spliceosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.989
	SRR3591706	second leaf	14.309
	SRR3591707	mature leaf	12.118
	SRR3591708	Shoot apex	19.199
	SRR3591709	Stem	24.085
	SRR3591710	White floral bud	24.898
	SRR3591711	White flower	27.914
	SRR3591712	Green floral bud	24.137
	SRR3591713	Yellow flower	21.033
SRP173429	SRR8316895	Juvenile bud stage	15.071
	SRR8316896	Juvenile bud stage	25.370
	SRR8316897	Juvenile bud stage	9.385
	SRR8316894	Third green stage	9.280
	SRR8316900	Third green stage	24.795
	SRR8316901	Third green stage	26.701
	SRR8316898	Complete white stage	5.335
	SRR8316899	Complete white stage	17.693
	SRR8316903	Complete white stage	17.535
	SRR8316902	Silver flowering stage	9.782
	SRR8316904	Silver flowering stage	16.153
	SRR8316905	Silver flowering stage	7.048
	SRR8316906	Gold flowering stage	18.809
	SRR8316907	Gold flowering stage	23.699
	SRR8316908	Gold flowering stage	21.404
SRP132670	SRR6706286	Control	29.060
	SRR6706287	Light intensity 50%	28.277
	SRR6706288	Light intensity 20%	27.914
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.610
	CNS0095593	Slightly white alabastrum(diploid) 2	17.055
	CNS0095594	Slightly white alabastrum(diploid) 3	20.343
	CNS0095595	Whole white alabastrum(diploid) 2	17.382
	CNS0095596	Whole white alabastrum(diploid) 3	13.143
	CNS0095597	Whole white alabastrum(diploid) 4	14.487
	CNS0095598	Silvery flower (diploied) 1	18.629
	CNS0095599	Silvery flower (diploied) 2	15.579
	CNS0095600	Silvery flower (diploied) 3	19.474
	CNS0095601	Golden flower (diploid) 1	16.067
	CNS0095602	Golden flower (diploid) 2	16.441
	CNS0095603	Golden flower (diploid) 3	18.136
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.011
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.971
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.928
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.112
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.004
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.375
	CNS0095610	Silvery flower (tetraploid) 1	22.346
	CNS0095611	Silvery flower (tetraploid) 2	17.490
	CNS0095612	Silvery flower (tetraploid) 3	15.785
	CNS0095613	Golden flower (tetraploid) 1	13.814
	CNS0095614	Golden flower (tetraploid) 2	20.051
	CNS0095615	Golden flower (tetraploid) 3	14.603
CRA001975	CRR073297	Stem 1	30.384
	CRR073298	Stem 2	28.341
	CRR073299	Stem 3	21.014
	CRR073300	Leaf 1	29.715
	CRR073301	Leaf 2	29.269
	CRR073302	Leaf 3	14.266
	CRR073303	Juvenile bud 1	22.713
	CRR073304	Juvenile bud 2	13.547
	CRR073305	Juvenile bud 3	25.464
	CRR073306	Third green 1	13.335
	CRR073307	Third green 2	11.322
	CRR073308	Third green 3	13.508
	CRR073309	Second white 1	7.031
	CRR073310	Second white 2	12.749
	CRR073311	Second white 3	12.563
	CRR073312	Silver flowering 1	11.307
	CRR073313	Silver flowering 2	10.924
	CRR073314	Silver flowering 3	13.960
	CRR073315	Gold flowering 1	4.023
	CRR073316	Gold flowering 2	8.955
	CRR073317	Gold flowering 3	2.642
	CRR073318	Tawny withering 1	15.546
	CRR073319	Tawny withering 2	16.186
	CRR073320	Tawny withering 3	14.692