Gene detail

Detail information of GWHGAAZE008534

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007021323.1	7.1886E-62	F-box and associated interaction domains-containing protein, putative isoform 1 [Theobroma cacao]
Swissprot	tr\|Q9SAB5\|FBLK2_ARATH	4E-23	Putative F-box/LRR-repeat/kelch-repeat protein At1g11620
trEMBL	tr\|A0A061F7J2\|A0A061F7J2_THECC	3E-62	F-box and associated interaction domains-containing protein, putative isoform 1 {ECO:0000313\|EMBL:EOY12848.1}
TAIR10	AT1G11620.1	5E-21	F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	80461804	80464927	+
GWHAAZE00000002	mRNA	80461804	80464927	+
GWHAAZE00000002	exon	80461804	80461839	+
GWHAAZE00000002	exon	80461929	80462914	+
GWHAAZE00000002	exon	80464804	80464927	+
GWHAAZE00000002	CDS	80461804	80461839	+
GWHAAZE00000002	CDS	80461929	80462914	+
GWHAAZE00000002	CDS	80464804	80464927	+

Transcript Sequence
>GWHTAAZE008542 ATGCCAATGATGCTGCTTATGTTAAGCTTTCTTAGGTATATTGACTATCTTCTTTTTCTTCCTTCAGATTTGTTGATCGAAATCCTCAATAGACTTCCAGTGAAGAGTTTGGTTAGATTTAGAAGCGTTTGCAAATCATGGCACTCCTTCATCAGTTCCCCATATTTCATCACCACCCACCTCAATCATAACAAAAATCGTAATAATCAAATACTTATAAGTGATTTATATTTCAATGGATATCATTGCAATCGTGGGAAAGAGTACTATTATGCATATAGTGACAACGGAACATCTGATAAGCTTGCGACTTTGCATGTTCCATTCACTTGCAAAGATGGGATTTTTCACATCTTAGGTAGTTCTAATGGACTAGTCTTCTTCTGTGACAACGAGTTTGGTTGTAAGCAAACCATGTATTTATGGAACCCATCCATTCAGAAATTCATCACCATTCCGAAGCCTAAAGTTACCATTGAATCACATGGCCCTTTTGACCATGCTTTAGGATTTGGCTTCGAAGCTGCAACCAATGACTACAAGATTGTGAGGCTTGCTTTTCTCCAATCAAATAATATTAGAGCACTGGTAAAGGTAGAGCTTTATGAGCTTAGTACGGGTTCTTGGCGAAGCGTTAATGTTGAAGACTTCAAATACGTTGTTGATAGGAAGTACGAAGACCACGCCTTTTTGAATGGCGTGATCCATTGGATTGGACATGAAAAAGATGGCCTTTTTCCTGAGTTTGTTGTGACATTTGACATGAAGAATGAGGAGTTGGGTGTTGTGATGATGCCGCCTAGTCTAGTGTGGCCATCGTTAATATTTGTATTTCGAGATTCACTTTATTTGATAGAACAAATTCAAACAGATAAACGTTATGGCATGTGGGTGATGAATGACTGTGGCGTAGCAGAGTCTTGGACAAAGTTGATCAACATTGATATGCCCGACTATTATTGGGCGCCACCATTTGGCTTTAGAGATAACGGAGATGTCTTACTCTCGAGAATAAGGACTTGTAATATCATGCTCGGGACCGTCAAGTCGAGATCTACAACTTCCCCCGTTGAAGGAGCAAACAATGCCGCGGCATTGGAGGGCCCTGGTGTGGTTAATGATTCTGCTCATGTCAAGCTTTCTTAG

Network for GWHGAAZE008534

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	20	57	2.80E-11
PF07734.14	FBA_1	230	319	2.60E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.628
	SRR3591706	second leaf	0.244
	SRR3591707	mature leaf	0.027
	SRR3591708	Shoot apex	0.256
	SRR3591709	Stem	0.513
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.068
	SRR8316896	Juvenile bud stage	0.281
	SRR8316897	Juvenile bud stage	0.079
	SRR8316894	Third green stage	0.113
	SRR8316900	Third green stage	0.964
	SRR8316901	Third green stage	0.353
	SRR8316898	Complete white stage	0.052
	SRR8316899	Complete white stage	0.032
	SRR8316903	Complete white stage	0.070
	SRR8316902	Silver flowering stage	0.017
	SRR8316904	Silver flowering stage	0.019
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.057
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.036
SRP132670	SRR6706286	Control	0.218
	SRR6706287	Light intensity 50%	0.071
	SRR6706288	Light intensity 20%	0.210
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.367
	CNS0095593	Slightly white alabastrum(diploid) 2	0.157
	CNS0095594	Slightly white alabastrum(diploid) 3	0.477
	CNS0095595	Whole white alabastrum(diploid) 2	0.562
	CNS0095596	Whole white alabastrum(diploid) 3	0.691
	CNS0095597	Whole white alabastrum(diploid) 4	1.005
	CNS0095598	Silvery flower (diploied) 1	0.112
	CNS0095599	Silvery flower (diploied) 2	0.177
	CNS0095600	Silvery flower (diploied) 3	0.059
	CNS0095601	Golden flower (diploid) 1	0.055
	CNS0095602	Golden flower (diploid) 2	0.108
	CNS0095603	Golden flower (diploid) 3	0.037
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.538
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.203
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.204
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.527
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.343
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.224
	CNS0095610	Silvery flower (tetraploid) 1	0.033
	CNS0095611	Silvery flower (tetraploid) 2	0.076
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.016
	CNS0095614	Golden flower (tetraploid) 2	0.168
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.125
	CRR073298	Stem 2	0.116
	CRR073299	Stem 3	0.062
	CRR073300	Leaf 1	0.306
	CRR073301	Leaf 2	0.252
	CRR073302	Leaf 3	0.267
	CRR073303	Juvenile bud 1	0.418
	CRR073304	Juvenile bud 2	0.238
	CRR073305	Juvenile bud 3	0.157
	CRR073306	Third green 1	0.092
	CRR073307	Third green 2	0.024
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.122
	CRR073312	Silver flowering 1	0.051
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.112
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.038
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.107
	CRR073320	Tawny withering 3	0.000