Gene detail

Detail information of GWHGAAZE008530

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP15868.1	2.1543E-133	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SIV2\|PSD2A_ARATH	2E-128	26S proteasome non-ATPase regulatory subunit 2 homolog A
trEMBL	tr\|A0A068V7J0\|A0A068V7J0_COFCA	8E-134	Coffea canephora DH200=94 genomic scaffold, scaffold_112 {ECO:0000313\|EMBL:CDP15868.1}
TAIR10	AT2G20580.1	8E-102	26S proteasome regulatory subunit S2 1A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	80407969	80411818	+
GWHAAZE00000002	mRNA	80407969	80411818	+
GWHAAZE00000002	exon	80407969	80408050	+
GWHAAZE00000002	exon	80408137	80408297	+
GWHAAZE00000002	exon	80408605	80408820	+
GWHAAZE00000002	exon	80409474	80409527	+
GWHAAZE00000002	exon	80409614	80409727	+
GWHAAZE00000002	exon	80410224	80410309	+
GWHAAZE00000002	exon	80410546	80410654	+
GWHAAZE00000002	exon	80410759	80410937	+
GWHAAZE00000002	exon	80411524	80411818	+
GWHAAZE00000002	CDS	80407969	80408050	+
GWHAAZE00000002	CDS	80408137	80408297	+
GWHAAZE00000002	CDS	80408605	80408820	+
GWHAAZE00000002	CDS	80409474	80409527	+
GWHAAZE00000002	CDS	80409614	80409727	+
GWHAAZE00000002	CDS	80410224	80410309	+
GWHAAZE00000002	CDS	80410546	80410654	+
GWHAAZE00000002	CDS	80410759	80410937	+
GWHAAZE00000002	CDS	80411524	80411599	+
GWHAAZE00000002	three_prime_UTR	80411600	80411818	+

Transcript Sequence
>GWHTAAZE008538 GATTTGGAAATTAAAAAGATTTGGGAATTTGTACATGCGGAAGTGGAGTTATCTAGTAAACTCCCTGCAATAATGGGAATGGCACTCGGCATTGGTTGGGTGGAAGGGAGGTGGGGGGGGCCAGTGCCTGGGCATGGAGTAGATGATTTCGTTGGGTGGAAGGGAGGTGGTTGCGATATGACGCTGGATTCTTGTGCCTATGCTGGATCAGGGAATGTATTAAAGGCAGTTAGGCAGCGCGTGGTTCAAGACTTTATGGGCCACTGTAACAGAGAAAATGAGGAGGATGGAGATTACGTGGGACCAGCTGTTGTTGGAATTGCTATGCTGGCAATGGATGAAAACGTGGGCCTTGAAATGTCTATGCGCTTGTTACACAATCTTTTACGGTATGGAGGGCCAAATATCAGAAGGGCAGTTCCTTTGGCTATTTCTCTTCTCTATATATCAGACCCAAAGGTCCATGTAATAGACACATTGACTAAACTTAGTCATGATGAAGATCTCGAAGTAGCTGCTATCATCTCTTTAGGGCTGATAGGTGCAGGAATTAACCATGCTAGAATTGCTGGAGTTCTCCGGAATCTTTCTAGTTTTTACTGCAGAAATGAAGTTCTTATCTTCTGTGTCCGAATAGCTCAAGGTCTTCTTTATATGGGAAAGGGGTTGCTGATTCTTTCTCCTTACCATTCTGACTGGTTCTTACTGTGCCGGACGGCACTGGCTGGACTTATTACTTTTCTCCACACGTGTCTGAATATGAGAGCCACCATTTTAGGGACACATAATTATCTCCTCTACTACCTAGTTTTGGCAATGCAGCCAAGAATGCTGATGACTGTGGACGAAAGTATGACACCTCTCTCGGTTCCGGTTCGGGTGGGCCGAGCGGTTGATGTTGCTGGAGAGCCAGGTCGAAGGAGGACCATCACGGGTTTCCAAACTCATTCAACTCCCGTTCTCTTAGGTGCGGGAGAAAGAGCTGAACTTGCTACAAACGAGTATGAATCTCTATCGCCTTTTCTTGAAGGCTTTGTGATCTTGAGAAGGAATTCCAGTCACACAGGAGATATCTAGTTAGACGCTCTTATAGAGGACCTGATTTTGATAGACCTGAACCAATTTTGATTCACTTAATTCTTGAATCAACCGATTCTAATTTTTTTAGGGAAGAATGATTATAATTGCAAAAAATGAATTCCAAAAGCTTGTGCATAAGAGAAACGGTTACAATTGTACATATATGTGACTATTATTCTTAGTGTCAATATGAATAATCATTCTTCTTGTCCCGAA

Network for GWHGAAZE008530

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF18051.2	RPN1_C	302	352	6.80E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03028	PSMD2, RPN1	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.893
	SRR3591706	second leaf	14.608
	SRR3591707	mature leaf	15.709
	SRR3591708	Shoot apex	23.492
	SRR3591709	Stem	23.389
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.120
	SRR3591712	Green floral bud	0.056
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	19.113
	SRR8316896	Juvenile bud stage	30.511
	SRR8316897	Juvenile bud stage	1.367
	SRR8316894	Third green stage	11.188
	SRR8316900	Third green stage	17.884
	SRR8316901	Third green stage	24.537
	SRR8316898	Complete white stage	5.488
	SRR8316899	Complete white stage	21.876
	SRR8316903	Complete white stage	15.662
	SRR8316902	Silver flowering stage	6.336
	SRR8316904	Silver flowering stage	8.828
	SRR8316905	Silver flowering stage	4.733
	SRR8316906	Gold flowering stage	12.112
	SRR8316907	Gold flowering stage	13.674
	SRR8316908	Gold flowering stage	4.739
SRP132670	SRR6706286	Control	11.189
	SRR6706287	Light intensity 50%	13.359
	SRR6706288	Light intensity 20%	14.193
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.908
	CNS0095593	Slightly white alabastrum(diploid) 2	23.409
	CNS0095594	Slightly white alabastrum(diploid) 3	22.676
	CNS0095595	Whole white alabastrum(diploid) 2	15.979
	CNS0095596	Whole white alabastrum(diploid) 3	16.351
	CNS0095597	Whole white alabastrum(diploid) 4	19.423
	CNS0095598	Silvery flower (diploied) 1	35.051
	CNS0095599	Silvery flower (diploied) 2	25.499
	CNS0095600	Silvery flower (diploied) 3	4.212
	CNS0095601	Golden flower (diploid) 1	28.788
	CNS0095602	Golden flower (diploid) 2	11.769
	CNS0095603	Golden flower (diploid) 3	10.284
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.472
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.540
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.505
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.113
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.591
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.191
	CNS0095610	Silvery flower (tetraploid) 1	0.450
	CNS0095611	Silvery flower (tetraploid) 2	0.237
	CNS0095612	Silvery flower (tetraploid) 3	0.126
	CNS0095613	Golden flower (tetraploid) 1	0.165
	CNS0095614	Golden flower (tetraploid) 2	0.133
	CNS0095615	Golden flower (tetraploid) 3	0.128
CRA001975	CRR073297	Stem 1	12.841
	CRR073298	Stem 2	11.357
	CRR073299	Stem 3	1.479
	CRR073300	Leaf 1	15.355
	CRR073301	Leaf 2	12.367
	CRR073302	Leaf 3	1.012
	CRR073303	Juvenile bud 1	2.180
	CRR073304	Juvenile bud 2	0.472
	CRR073305	Juvenile bud 3	2.768
	CRR073306	Third green 1	0.293
	CRR073307	Third green 2	0.087
	CRR073308	Third green 3	0.268
	CRR073309	Second white 1	0.090
	CRR073310	Second white 2	0.440
	CRR073311	Second white 3	0.162
	CRR073312	Silver flowering 1	0.178
	CRR073313	Silver flowering 2	0.220
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.702
	CRR073316	Gold flowering 2	2.541
	CRR073317	Gold flowering 3	0.234
	CRR073318	Tawny withering 1	3.817
	CRR073319	Tawny withering 2	8.845
	CRR073320	Tawny withering 3	2.829