Gene detail

Detail information of GWHGAAZE008454

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP18600.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|F4I096\|MED13_ARATH	Mediator of RNA polymerase II transcription subunit 13
trEMBL	tr\|A0A068VCN7\|A0A068VCN7_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_256 {ECO:0000313\|EMBL:CDP18600.1}
TAIR10	AT1G55325.2	RNA polymerase II transcription mediators

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	76296489	76311312	+
GWHAAZE00000002	mRNA	76296489	76311312	+
GWHAAZE00000002	exon	76296489	76296856	+
GWHAAZE00000002	exon	76296958	76297042	+
GWHAAZE00000002	exon	76298718	76300091	+
GWHAAZE00000002	exon	76300944	76301211	+
GWHAAZE00000002	exon	76301571	76301701	+
GWHAAZE00000002	exon	76304178	76304307	+
GWHAAZE00000002	exon	76305256	76305596	+
GWHAAZE00000002	exon	76307685	76308759	+
GWHAAZE00000002	exon	76309445	76309864	+
GWHAAZE00000002	exon	76310489	76311312	+
GWHAAZE00000002	CDS	76296489	76296856	+
GWHAAZE00000002	CDS	76296958	76297042	+
GWHAAZE00000002	CDS	76298718	76300091	+
GWHAAZE00000002	CDS	76300944	76301211	+
GWHAAZE00000002	CDS	76301571	76301701	+
GWHAAZE00000002	CDS	76304178	76304307	+
GWHAAZE00000002	CDS	76305256	76305596	+
GWHAAZE00000002	CDS	76307685	76308759	+
GWHAAZE00000002	CDS	76309445	76309864	+
GWHAAZE00000002	CDS	76310489	76311312	+

Transcript Sequence
>GWHTAAZE008462 ATGAGATATGTACTATTTATGCAGGGTTCTAAGCGACCTCGAAGTGGGATAACAGAATCATATAGTCAGGCAGGTGGAGTTATAAATGCTAACATGCACGACCCATATAAGTCCGATTTTGGTTCGATGGAAGTCAGCAATTCAGCCATTACCGGGCTTGGAAATGACCAGATTGGTTGGGATTGGGACGATGATGATAGAGCTGGTGGGGGCATGGATATCCAAGCACTTCTTTCGGAGTTTGGAGATTTTGGGGACTTCTTTGAGAATGATGTTTTGCCATTTGGGGAGGTAACTCTTTTTTCTTTTTGGTTAATTTTTTTTTTCCTGGGTTCATGGGGAGGTAACTCTTATTCTTTGGGAATTAATTCAATTTCAACTTTATTTTTTCTGGTGAGTTATGGTAATTTGACTCTTAAGGCACAGGTGCAGTCCATATTTGAAAAGTTAAAGCAATTGAAGTTGAGACTAATAATCTGTCACTATATTGTGAAGCCACCAGGAACCGCTGAGTCACAGGCTCTTATGTTTTCTACGCCAGATTGTGGAGATATAGTTGCGAGCCCCTCTACTGGGATGATGGATGTTTCCGATCAGATGCTCTTGCCTGTCGGTTTTCCATCCTTTGATAGCTTTAATCCAGCTCCACCAGTTATGGAAGAGCCATTGGCTAAAAATCAAGAAGTCACTAACAACTTAGTGTCCTCTGTTTCAATGGGCTATAACACTCCACAACCTTGTACAACTGAGTTTGATTATTTAATAAAAGCAGAAGCATTGATGACATTTGCTCCGGAATACGGAGCTGTTGAAACCCCTGCGAGCGAGTTTTCCTCAACAATTTTTAGAAGCCCGTATATACCACAATCTCGAAAAGTGGAGAGTGCAAATTCAAGCTCTAGTAATTATGTATATTCTGCAACACCACCTTCTCCTTGCATTGATGGATCTGATGAGAAGCCTAGCATGTCCGTAAATGCAAAAGTATCCTCAGGTTCAAAGAAATATTACAATCATGTTGATGGCACAAAAGAGAAGAATGATAGAAATTATTTGAATGGTAACAGTAGCATTGCGTCACGTGAGGGTCCGGAACCATCTCCATTTTCTACACATGCTGTGAATTCTGTCCACAGGAAAATGATTGAAGGCTCATCTGGAACTGGAAATCTCCTCAGGTCTATGAAGACCGTGCTTGCAAATGAAATTGAGTGCATTATGTTCCAAGCTTTTATGTGTAAAATACGACATACATTGATATCTTCCAGCAACCCACCATCTGTCGGCTTGAATAGGTTATCTGGAAGTACCGTTCTGAATCCACTACATGGGGACACCAGCATTATGGCTGACAATATTTCTAGCAAATATGAGGTGAAGAAGAAAGAGTCTATACCAGTTAGAATAGCTGGTGACTTAGATGGGGGAATGCTAGATGGGCCCCTTCATGCACCTGTTGGTGTTTGGCGAACTGTTGGAGTTTCTAAAGGTTCAAAACCCTCTACACCTAGTATGGAAGTTTGCCCATCTCTGTCTCATAATTCATTTAATGAGGAAGCTATACTTTCCTATGGGCAGAGGCAACCACTTATGGAACTTCTAAATGGAATGGCGTTACTTGTCCAACAAGCTACTTCATTTGTTGATGTAGCCCTAGATGCTGATTGTGGTGATGGTCCTTATGGTTGCTTGGCATTACAAGAGCAGTGGAGACGTGGATTTTCATGTGGTCCCTCTATGGTGCACGCTGGTTGTGGGGGCGTTTTAGCCTCTTGTCATTCCCTGGACATTGCTGGTGTCGAGCTAGTGGATCCATTGTCAGTTGATGTTAATGCATCATCTGCTATTAGTTTGCTACAGTCTGATATAAAAATGGCCTTAAAATCTGCTTTTGGCACATTGGATGGCCCATTGTCTGTCACTGACTGGTGCAAAGGTCGCAGTCAATCTGGTGATGTTGGAACTGTGGGTGACGGATTTTCAGGTGAATCTTCAGCAAGTGCAAGTGAGTGCAGAGATTCTTCGAGCACTCTGTCTGTTGGAGAACCAATAAGCCCATCTCAGTCCTCTGTTGGCGGATCATCATCCGTTAAAGTGGCACAGATGAAACAAGTGAAAGGAGATCAAGCCAAGAAGCATGTACATCTGAGTCAGATCAGCAAATGGCCTCAAGGCTCAGGCCCACACTCTTTGTACTTCCCTTTCCTGCAATACTCGTTGGGTATGATGACTTATTATGTTGTATGTCCGGACATTGACCCCCTTACTGCTGCTGCTGCTGATTTTTTCCAGCAACTTGGAACCAGTGAGTATCTTAGGAGGAGCCATATCCATGCTTTGTTCATATGCATGAATGTAAATTGTCCCATAAGCTTTACAAATGTTTTTTTTTTAACCTCAGTTTATGAAACTTGCAAGCTGGGAACACATTCACCTCAGAGTATGGGAAATCAAATGGAAATAGACTCTGGGAAATGGTCTTCTTCTGGTTTTGTTCCACTTGATTGCCCTCAATCAATGAAGATAGAAAGCAGTAGTGCATCTCTGGTGGGATCAATTAGTGATTATTTTCTCTCTCTGTCCAATGGTTGGGATTTGACAAGCTACCTGAAGTCTCTTGTAAAGGTTCTTAAAACTTTGAAGCTTGGTTCATGCCTATCCACAAACCCTAAAGAAGGAAGTAGTGGCCCTTGTATGGTAATATATGTGGTGTGCCCCTTTCCCGAGCCGACTGCAGTTCTGAAGACCATCGTTGAATCTTCCGCAGCTCTTGGATCTGTCATTGTTTCTTCAGATAAAGAGAGGAGAACTATATTGCACAGTCAAGTTGGGAAGGCACTAAGCTGCTCTACAGCTGTTGATGAAGCATCAATATCAAATATCGTCACACTTTCAGGGTTTAGCATCCCTAAATTGGTATTACAGATTGTGACAGTTGATGCCATTTTTAGGGTCACAAGTCCATCTCTTAATGAACTCGTCATTCTCAAAGAGAATGCTTTCACTGTTTACAACAAAGCTCGTAGAATCTCACGAGGATGCTCTGGTGAAGTGGTGCCATCATCATTTATAACTGGCAGATCCAACTCGTCCTCGATGCAAATGACTTCTTCCCCTATTTCGGGGATGTGGAAGGATTGTATCGGTCCTCGAATTACGGGTCAGAGAGATGGTGAACTTGATGCTAGCTTAAGGACTGGTCCTTGGGATAATTCTTGGCAAATGTCGAGGACTGGAGGACTAGGATCTGATCCAAACAGAACCGGAGATATTCATAATCAAGATGAAATCCGTTATATGTTTGAACCACTGTTCATTCTTGCAGAACCCGGATCTTTGGACCGTGGAGTTTCACCTCCACTTTTTGGGAATCTTGCATGTGAATCTTCAAAGATGCTTTTGGACGATGGTACTAGTACTGTAGATGGTGGACCAAGCAATCAACTTGACGGGTCAGATCTGGATGGGTTTGGATCAGGTCACCAAAAGACGGTCCCGAGTTTACATTGTTGCTATGGATGGACCGAGGATTGGCGTTGGCTAGTATGCGTATGGACCGATTCAAGAGGAGAATTGCTTGACAGCTATATATTCCCCTTCGGCGGAATAAGTAGTAGGCAGGACACAAAGGGTCTTCAATTCTTGTTTGTCCAAATTCTGCAGAAAGGGTGTCAAATACTTCAGGCGTGTTCTCCTGATACTACTGGAATAGTCAAGCCTAGAGATTTCGTTGTTACGCGCATTGGATGCTACTTTGAGCTGGAGTGCCAGGAATGGCAGAAAGCCCTATATTCAATTGGAGGTTCGGAGGTGAAAAAGTGGGCCCTACAGCTACGACGATCTCTGCCTGATGGGATGCCTTCTTCAAGCAGTAACGGGGCTACTTCTTTACAACAAGAGATGAGTTTGATTGAAGAGAGAACCCTACTGCCCTCCTCACCAAGTCCTTTGTACAGCAGCTCTCACACAAAGTCGTCTTCTTCTACCTTTATGAAAGGCGGCGGCGGCGGTTTGGGACAACCACCCTCCTCTGCCCGAAAGCAGCAGCTAATGGGCGGTGGACATAATAACACGGCGGACAATTCAAGGGGGGGCTTGCTTCAGTGGGTCCAAAGTATCAGTTTCGTCTCCATTTCAGTCGATCATTCCTTGCAACTTGTTTTGCAAGCAGATTCAACGTCTCCTGGACCGGTATCCGTTCATGGACCTCAAACACTAAAAGGAAGAAAAAAAAGGACATGGACTGCATTCAAAAAAATTTCCAAACTCAAGGGACCTAACTCTATCTCTATAAATAACTCAAAACTACATGAAAGAAAAATAACTATTTCTTCTTCTTATGCTATTACAATTCCTACTGTTGCAGGGACAAGTCAAGGTAGCGGCACCATGGGGCAATCAAGCTATCTGGAGGGGTTCACCCCCGTAAAGTCACTTGGTTCTACATCAGCCTCCTATATTTTGATCCCATCACCCAGCATGCGATTTCTCCCCCCAACCCCACTTCAGCTTCCCACATGCCTCAAGTCAGAATCCCCACCCTTGGCCCACCTCCTTCACAGCAAGGGCACCGCAATTCCCCTCTCTACGGGTTTTGTGGTCTCGAAATCCGTACCCTCCATGAGAAAAGACTCCTCTAGAATCAACAACTCCAAGGTCGAAGAATGGCCTTCGGTTCTTTCCGTTAATCTCGTTGATTATTATGGAGGTCACAATAACAATAACCTCACTGCCACCCAAGAGAAAATGGTGGTGAAAGGCAAGCCTGGAGGAGGAAGAAGCATGGTGGTGGCGGAAGGTGGTGGTGGTAGTAGAGATATAGAAGTAGAGATGCATTTGATCCTTGAGAGCGTGGCGGCCGAGCTTCATGCTCTATCGTGGATGACAGTGAGCCCGGCCTACTTGGAAAGGCGGACTTCGCTCCCTTTTCATTGTGATATGGTTTTGAGACTCCGGAGACTACTACATTTTGCTGACAAGGAACTTTCTCGGCAGCCCGATAAATCCGAGCCTTAG

Network for GWHGAAZE008454

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF18296.2	MID_MedPIWI	777	1009	5.20E-27
PF06333.13	Med13_C	1167	1648	5.50E-11

Protein Sequence

>GWHPAAZE008458
MRYVLFMQGSKRPRSGITESYSQAGGVINANMHDPYKSDFGSMEVSNSAITGLGNDQIGWDWDDDDRAGGGMDIQALLSEFGDFGDFFENDVLPFGEVTLFSFWLIFFFLGSWGGNSYSLGINSISTLFFLVSYGNLTLKAQVQSIFEKLKQLKLRLIICHYIVKPPGTAESQALMFSTPDCGDIVASPSTGMMDVSDQMLLPVGFPSFDSFNPAPPVMEEPLAKNQEVTNNLVSSVSMGYNTPQPCTTEFDYLIKAEALMTFAPEYGAVETPASEFSSTIFRSPYIPQSRKVESANSSSSNYVYSATPPSPCIDGSDEKPSMSVNAKVSSGSKKYYNHVDGTKEKNDRNYLNGNSSIASREGPEPSPFSTHAVNSVHRKMIEGSSGTGNLLRSMKTVLANEIECIMFQAFMCKIRHTLISSSNPPSVGLNRLSGSTVLNPLHGDTSIMADNISSKYEVKKKESIPVRIAGDLDGGMLDGPLHAPVGVWRTVGVSKGSKPSTPSMEVCPSLSHNSFNEEAILSYGQRQPLMELLNGMALLVQQATSFVDVALDADCGDGPYGCLALQEQWRRGFSCGPSMVHAGCGGVLASCHSLDIAGVELVDPLSVDVNASSAISLLQSDIKMALKSAFGTLDGPLSVTDWCKGRSQSGDVGTVGDGFSGESSASASECRDSSSTLSVGEPISPSQSSVGGSSSVKVAQMKQVKGDQAKKHVHLSQISKWPQGSGPHSLYFPFLQYSLGMMTYYVVCPDIDPLTAAAADFFQQLGTSEYLRRSHIHALFICMNVNCPISFTNVFFLTSVYETCKLGTHSPQSMGNQMEIDSGKWSSSGFVPLDCPQSMKIESSSASLVGSISDYFLSLSNGWDLTSYLKSLVKVLKTLKLGSCLSTNPKEGSSGPCMVIYVVCPFPEPTAVLKTIVESSAALGSVIVSSDKERRTILHSQVGKALSCSTAVDEASISNIVTLSGFSIPKLVLQIVTVDAIFRVTSPSLNELVILKENAFTVYNKARRISRGCSGEVVPSSFITGRSNSSSMQMTSSPISGMWKDCIGPRITGQRDGELDASLRTGPWDNSWQMSRTGGLGSDPNRTGDIHNQDEIRYMFEPLFILAEPGSLDRGVSPPLFGNLACESSKMLLDDGTSTVDGGPSNQLDGSDLDGFGSGHQKTVPSLHCCYGWTEDWRWLVCVWTDSRGELLDSYIFPFGGISSRQDTKGLQFLFVQILQKGCQILQACSPDTTGIVKPRDFVVTRIGCYFELECQEWQKALYSIGGSEVKKWALQLRRSLPDGMPSSSSNGATSLQQEMSLIEERTLLPSSPSPLYSSSHTKSSSSTFMKGGGGGLGQPPSSARKQQLMGGGHNNTADNSRGGLLQWVQSISFVSISVDHSLQLVLQADSTSPGPVSVHGPQTLKGRKKRTWTAFKKISKLKGPNSISINNSKLHERKITISSSYAITIPTVAGTSQGSGTMGQSSYLEGFTPVKSLGSTSASYILIPSPSMRFLPPTPLQLPTCLKSESPPLAHLLHSKGTAIPLSTGFVVSKSVPSMRKDSSRINNSKVEEWPSVLSVNLVDYYGGHNNNNLTATQEKMVVKGKPGGGRSMVVAEGGGGSRDIEVEMHLILESVAAELHALSWMTVSPAYLERRTSLPFHCDMVLRLRRLLHFADKELSRQPDKSEP

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15164	MED13	Thyroid hormone signaling pathway	map04919

Gene Ontology

GO term	Ontology	Name
GO:0006357	biological_process	regulation of transcription by RNA polymerase II
GO:0016592	cellular_component	mediator complex
GO:0003712	molecular_function	transcription coregulator activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.603
	SRR3591706	second leaf	11.319
	SRR3591707	mature leaf	13.083
	SRR3591708	Shoot apex	14.305
	SRR3591709	Stem	18.007
	SRR3591710	White floral bud	19.398
	SRR3591711	White flower	25.067
	SRR3591712	Green floral bud	21.641
	SRR3591713	Yellow flower	18.565
SRP173429	SRR8316895	Juvenile bud stage	8.419
	SRR8316896	Juvenile bud stage	10.308
	SRR8316897	Juvenile bud stage	5.362
	SRR8316894	Third green stage	4.764
	SRR8316900	Third green stage	9.510
	SRR8316901	Third green stage	9.904
	SRR8316898	Complete white stage	2.913
	SRR8316899	Complete white stage	11.177
	SRR8316903	Complete white stage	6.803
	SRR8316902	Silver flowering stage	4.500
	SRR8316904	Silver flowering stage	6.687
	SRR8316905	Silver flowering stage	3.058
	SRR8316906	Gold flowering stage	10.415
	SRR8316907	Gold flowering stage	10.911
	SRR8316908	Gold flowering stage	12.053
SRP132670	SRR6706286	Control	10.176
	SRR6706287	Light intensity 50%	10.183
	SRR6706288	Light intensity 20%	11.476
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.812
	CNS0095593	Slightly white alabastrum(diploid) 2	5.867
	CNS0095594	Slightly white alabastrum(diploid) 3	6.423
	CNS0095595	Whole white alabastrum(diploid) 2	5.053
	CNS0095596	Whole white alabastrum(diploid) 3	3.703
	CNS0095597	Whole white alabastrum(diploid) 4	4.527
	CNS0095598	Silvery flower (diploied) 1	8.110
	CNS0095599	Silvery flower (diploied) 2	8.025
	CNS0095600	Silvery flower (diploied) 3	11.691
	CNS0095601	Golden flower (diploid) 1	7.534
	CNS0095602	Golden flower (diploid) 2	14.597
	CNS0095603	Golden flower (diploid) 3	12.981
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.780
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.150
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.975
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.594
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.121
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.487
	CNS0095610	Silvery flower (tetraploid) 1	11.245
	CNS0095611	Silvery flower (tetraploid) 2	11.547
	CNS0095612	Silvery flower (tetraploid) 3	10.217
	CNS0095613	Golden flower (tetraploid) 1	5.990
	CNS0095614	Golden flower (tetraploid) 2	10.814
	CNS0095615	Golden flower (tetraploid) 3	13.911
CRA001975	CRR073297	Stem 1	14.556
	CRR073298	Stem 2	13.766
	CRR073299	Stem 3	11.208
	CRR073300	Leaf 1	14.790
	CRR073301	Leaf 2	14.115
	CRR073302	Leaf 3	7.819
	CRR073303	Juvenile bud 1	9.164
	CRR073304	Juvenile bud 2	6.336
	CRR073305	Juvenile bud 3	14.471
	CRR073306	Third green 1	3.105
	CRR073307	Third green 2	3.139
	CRR073308	Third green 3	4.141
	CRR073309	Second white 1	4.834
	CRR073310	Second white 2	5.844
	CRR073311	Second white 3	8.281
	CRR073312	Silver flowering 1	6.646
	CRR073313	Silver flowering 2	7.353
	CRR073314	Silver flowering 3	5.417
	CRR073315	Gold flowering 1	6.289
	CRR073316	Gold flowering 2	11.163
	CRR073317	Gold flowering 3	7.308
	CRR073318	Tawny withering 1	11.448
	CRR073319	Tawny withering 2	12.951
	CRR073320	Tawny withering 3	10.569