Detail information of GWHGAAZE008397


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002285721.10PREDICTED: tubulin alpha-3 chain [Vitis vinifera]
Swissprottr|B9DHQ0|TBA5_ARATH0Tubulin alpha-5 chain
trEMBLtr|F6GUN1|F6GUN1_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB43808.1}
TAIR10AT5G19770.10tubulin alpha-3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene7323580673239021-
GWHAAZE00000002mRNA7323580673239021-
GWHAAZE00000002exon7323580673236118-
GWHAAZE00000002exon7323655773237065-
GWHAAZE00000002exon7323741373237612-
GWHAAZE00000002exon7323770273237961-
GWHAAZE00000002exon7323887373239021-
GWHAAZE00000002CDS7323887373239021-
GWHAAZE00000002CDS7323770273237961-
GWHAAZE00000002CDS7323741373237612-
GWHAAZE00000002CDS7323655773237065-
GWHAAZE00000002CDS7323580673236118-
Transcript Sequence

Network for GWHGAAZE008397

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00091.26Tubulin152401.30E-66
PF03953.18Tubulin_C2904197.30E-51
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07374TUBA Phagosome map04145
Apoptosismap04210
Tight junctionmap04530
Gap junctionmap04540

Gene Ontology

GO term OntologyName
GO:0007017biological_processmicrotubule-based process
GO:0005874cellular_componentmicrotubule
GO:0005200molecular_functionstructural constituent of cytoskeleton
GO:0005525molecular_functionGTP binding
GO:0003924molecular_functionGTPase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf627.793
SRR3591706second leaf358.159
SRR3591707mature leaf219.346
SRR3591708Shoot apex445.904
SRR3591709Stem231.876
SRR3591710White floral bud488.916
SRR3591711White flower376.144
SRR3591712Green floral bud479.206
SRR3591713Yellow flower267.940
SRP173429 SRR8316895Juvenile bud stage 217.986
SRR8316896Juvenile bud stage 297.833
SRR8316897Juvenile bud stage 130.600
SRR8316894Third green stage 142.323
SRR8316900Third green stage 412.263
SRR8316901Third green stage 357.007
SRR8316898Complete white stage 228.966
SRR8316899Complete white stage 473.240
SRR8316903Complete white stage 398.713
SRR8316902Silver flowering stage163.621
SRR8316904Silver flowering stage259.635
SRR8316905Silver flowering stage130.393
SRR8316906Gold flowering stage 407.899
SRR8316907Gold flowering stage 442.307
SRR8316908Gold flowering stage 480.318
SRP132670SRR6706286Control462.898
SRR6706287Light intensity 50%539.434
SRR6706288Light intensity 20%573.588
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1266.135
CNS0095593Slightly white alabastrum(diploid) 2326.418
CNS0095594Slightly white alabastrum(diploid) 3241.850
CNS0095595Whole white alabastrum(diploid) 2250.226
CNS0095596Whole white alabastrum(diploid) 3253.202
CNS0095597Whole white alabastrum(diploid) 4240.109
CNS0095598Silvery flower (diploied) 1235.785
CNS0095599Silvery flower (diploied) 2258.558
CNS0095600Silvery flower (diploied) 3446.712
CNS0095601Golden flower (diploid) 1186.598
CNS0095602Golden flower (diploid) 2445.443
CNS0095603Golden flower (diploid) 3442.482
CNS0095604Slightly white alabastrum(tetraploid) 1397.541
CNS0095605Slightly white alabastrum(tetraploid) 2313.169
CNS0095606Slightly white alabastrum(tetraploid) 3734.405
CNS0095607Whole white alabastrum(tetraploid) 1235.562
CNS0095608Whole white alabastrum(tetraploid) 2230.190
CNS0095609Whole white alabastrum(tetraploid) 3486.111
CNS0095610Silvery flower (tetraploid) 1473.979
CNS0095611Silvery flower (tetraploid) 2483.952
CNS0095612Silvery flower (tetraploid) 3555.929
CNS0095613Golden flower (tetraploid) 1260.947
CNS0095614Golden flower (tetraploid) 2452.437
CNS0095615Golden flower (tetraploid) 3337.728
CRA001975CRR073297Stem 1515.581
CRR073298Stem 2503.902
CRR073299Stem 3589.714
CRR073300Leaf 1556.797
CRR073301Leaf 2562.790
CRR073302Leaf 3558.988
CRR073303Juvenile bud 1701.946
CRR073304Juvenile bud 2792.669
CRR073305Juvenile bud 3706.681
CRR073306Third green 1799.539
CRR073307Third green 2714.677
CRR073308Third green 3731.574
CRR073309Second white 1585.549
CRR073310Second white 2425.692
CRR073311Second white 3379.834
CRR073312Silver flowering 1432.107
CRR073313Silver flowering 2440.264
CRR073314Silver flowering 3413.620
CRR073315Gold flowering 1532.960
CRR073316Gold flowering 2648.364
CRR073317Gold flowering 3561.643
CRR073318Tawny withering 1862.791
CRR073319Tawny withering 2588.882
CRR073320Tawny withering 3996.930