Gene detail

Detail information of GWHGAAZE008382

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDO63062.1	0	hypothetical protein CISIN_1g003663mg [Citrus sinensis]
Swissprot	tr\|P93756\|SD31_ARATH	1E-104	G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 (Precursor)
trEMBL	tr\|A0A067FHX6\|A0A067FHX6_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO63062.1}
TAIR10	AT2G41890.1	2E-93	curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	72913047	72915483	+
GWHAAZE00000002	mRNA	72913047	72915483	+
GWHAAZE00000002	exon	72913047	72914811	+
GWHAAZE00000002	exon	72914912	72915483	+
GWHAAZE00000002	CDS	72913047	72914811	+
GWHAAZE00000002	CDS	72914912	72915483	+

Transcript Sequence
>GWHTAAZE008390 ATGTTTGTTTTTCGGAGCATTCAGCTACTTTCTGAGTTACCAAACAGGCATTTTCCAGGTAAAAGCTGTAGAATCTGTTATTTTGGAAGGTTTAGTTCTGTTCTAGCTTTGATAGTGTTATTGGGTTTTGCTTCTTGTGGGCTTTGTCATGATTCTTCCATGGTTTCAGCCCCTTTAGGGTTTGAGATTTGTGGGTTTGATAGAACCAAGAATTTGGTATCTGAAAATGGGGTTTTTGAATTTGGGTTCTTTGAAAAAGATGATACTGCTGATGTTGATGGGTTTGTTGTTGGCATTAGATACAAATTAGGGTTTAAAGCTGCTAGTTTGCCAGTTTGGACTGTTGGTGGAGGCCTTAGGGTTTCTACAAACTCCACATTTAGGCTTTCCATGGATGGGAAGCTTGTACTTTTTGAAAACCCTAGTGGCTTAATTGTTTGGAGTAGTAATACCTCTAATTTAGGTGTCCAAAAAGCTACCCTTTTGAACAATGGTGATTTTGTTCTTATGGGTGTTGATGATAAAGTCCTTTGGGAAAGCTTTAATAGCCCTACAAACACTTTACTCCCTGGTCAATCTTTCCACTACCCACAAAACCTTAGAGCCCCTTCTAAAAAACCCATTTCAAGTTACTACAATTTTGTAATTCGTCGGTCTGGGGAACTCTCCCTTGTTTGGGAGGACAATGTGACCTATTGGGGAACTCATTTGAGCTCCTCTGCTATTGTGAAAGAAGCGAGGTTGGATGGTAATGGTGTTTTAGGACTATATGATGATGCTGGTAAGGCTGTTTGGTCTGTGTCTAGTAAAGATTTTGGTGACCCTTTGGTTAGTTTGAGGCATTTAAGGGTCGACCAAGATGGGAATTTGAGAATTTATTCGTGGGATGACTCGCTTCATTCTTGGAGAACTGGGTGGCAAGCGGTTGAGGACCAGTGCAGTGTGTTTGGCTTTTGTGGGTTGTACAGTGTTTGTGGGTACAACTCCATGGGGCCTGTTTGTAACTGCTTGTACTCGGACTCAGTTCAATCAGGTATGGATCCGGGCGGTTCTTTGTGCAAGAAAATGGTGGATTTAGATAACTGCAAGATGCGTACGAGTATGGTGGCTATGACACAAACGATTCTTTACGGTCTTTATCCTCCTCACGATTTCGATATCTTGTTGAGTGAAGAATCTTGCAAAGAGTATTGCTCCAATGATACTTCTTGCATTGCTGTGACTTCAAAGAATGACGGGTCGGGCCTGTGTACTGTCAAACGGACCAGCTTTATTAGCGGGCTAGCCACTCCGTATGTCCCCTCGACTTCGTTCTTGAAGGTATGTTTTGTTCCTCAGGCTGTTTCGGCTCATGGGGCTAACCCATATGGCAATTCCGGTTCCATTTCCTTGCCATCGGGCCAAGTCAAGGCTCGAGGAGAAAGTGGTAAAAGATTCATAGGAGCTATAGTGGTTATAGCTTTTGTGACTGTTACACTTATTCTAACCTTTGAAATCTTCGCGTTTTGGTTTATAAATCGAAGGAGGAAAATAAAGGACCGAGCAAGGATTCCCTTTGGGAAAGATGATAAGATGAACCCGCATTATAGTGCAGTCATAAGATTATCTTTTGAAGAGATAAAAGAACTCACTACCAACTTTACGGTTCAACTTGGCCCTTCCGTTTACAAGGGCTTACTTCCAAATAAAACATTGGTGGTTGCTAAAGTGATTAATAGCGAATCGGTAACCGAAAAGGAATTCCGAGTGGTGGTTTCTACACTGGATAATTGGTTGTTCAACATAAAAACCGCCAAGAACGAAGGGAAGAATTGGCAAAAAAGGCTTGAGATTACTCTTGGGATTGTGCGTGCGCTTGCTTATTTACACACCGAGTGTCAAAAATGCATAACACATGGGAATTTGAAGCTCGAAAATGTCTTGCTTGATGAAAATTTGGTTCCAAAGGTTACCGATTTTGGGCTTCGGAGTTTACTTCAAAAGGAAGCGGCCTCTTCATCATCTTCTTCTATGGAGTCTCCATCTGAAAAAGATATTTACATGCTCGGAGAAATGTTACTTCAAATTGTTTTATGCAAAAGGGATATTGTGGTGGATAACATTGACCAAGTTATCAGCGAATTTAATCAAGAACAAGAATGTGTGGCTAGTGAGGATTTGGAAGGGGTTGAAAGAACAGTGAGGATAGCCTTGTGGTGTATGCACAGTCAACCATTTTCGAGACCTTCCATTGGCGAAGTTGTTAAGGTGTTAGAAGGTACACTCTCTGTTGATAGGCCCCCATTAACTCTTGCTATTAGACACAATGATACGATGGAAATTGAGAGTGAGTCTTAG

Network for GWHGAAZE008382

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01453.25	B_lectin	123	196	1.80E-12
PF00954.21	S_locus_glycop	279	337	3.80E-10
PF00069.26	Pkinase	592	664	5.60E-10

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_SD-2b

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0048544	biological_process	recognition of pollen
GO:0004713	molecular_function	protein tyrosine kinase activity
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.745
	SRR3591706	second leaf	3.942
	SRR3591707	mature leaf	2.252
	SRR3591708	Shoot apex	7.079
	SRR3591709	Stem	1.835
	SRR3591710	White floral bud	1.326
	SRR3591711	White flower	2.651
	SRR3591712	Green floral bud	1.758
	SRR3591713	Yellow flower	1.201
SRP173429	SRR8316895	Juvenile bud stage	0.449
	SRR8316896	Juvenile bud stage	1.108
	SRR8316897	Juvenile bud stage	0.285
	SRR8316894	Third green stage	0.982
	SRR8316900	Third green stage	1.539
	SRR8316901	Third green stage	1.671
	SRR8316898	Complete white stage	1.175
	SRR8316899	Complete white stage	1.823
	SRR8316903	Complete white stage	1.428
	SRR8316902	Silver flowering stage	1.140
	SRR8316904	Silver flowering stage	2.186
	SRR8316905	Silver flowering stage	0.847
	SRR8316906	Gold flowering stage	4.418
	SRR8316907	Gold flowering stage	1.874
	SRR8316908	Gold flowering stage	1.806
SRP132670	SRR6706286	Control	1.044
	SRR6706287	Light intensity 50%	1.080
	SRR6706288	Light intensity 20%	1.103
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.087
	CNS0095593	Slightly white alabastrum(diploid) 2	1.545
	CNS0095594	Slightly white alabastrum(diploid) 3	0.611
	CNS0095595	Whole white alabastrum(diploid) 2	0.859
	CNS0095596	Whole white alabastrum(diploid) 3	1.255
	CNS0095597	Whole white alabastrum(diploid) 4	1.049
	CNS0095598	Silvery flower (diploied) 1	2.621
	CNS0095599	Silvery flower (diploied) 2	1.646
	CNS0095600	Silvery flower (diploied) 3	3.168
	CNS0095601	Golden flower (diploid) 1	1.809
	CNS0095602	Golden flower (diploid) 2	3.581
	CNS0095603	Golden flower (diploid) 3	4.245
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.018
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.455
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.172
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.877
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.298
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.886
	CNS0095610	Silvery flower (tetraploid) 1	1.561
	CNS0095611	Silvery flower (tetraploid) 2	2.851
	CNS0095612	Silvery flower (tetraploid) 3	1.944
	CNS0095613	Golden flower (tetraploid) 1	1.438
	CNS0095614	Golden flower (tetraploid) 2	1.521
	CNS0095615	Golden flower (tetraploid) 3	6.793
CRA001975	CRR073297	Stem 1	2.443
	CRR073298	Stem 2	2.741
	CRR073299	Stem 3	3.419
	CRR073300	Leaf 1	2.500
	CRR073301	Leaf 2	2.092
	CRR073302	Leaf 3	2.255
	CRR073303	Juvenile bud 1	1.627
	CRR073304	Juvenile bud 2	2.098
	CRR073305	Juvenile bud 3	2.017
	CRR073306	Third green 1	0.399
	CRR073307	Third green 2	0.158
	CRR073308	Third green 3	0.369
	CRR073309	Second white 1	0.507
	CRR073310	Second white 2	0.392
	CRR073311	Second white 3	0.319
	CRR073312	Silver flowering 1	0.070
	CRR073313	Silver flowering 2	0.025
	CRR073314	Silver flowering 3	0.280
	CRR073315	Gold flowering 1	1.276
	CRR073316	Gold flowering 2	2.049
	CRR073317	Gold flowering 3	3.555
	CRR073318	Tawny withering 1	3.392
	CRR073319	Tawny withering 2	2.013
	CRR073320	Tawny withering 3	4.526