Gene detail

Detail information of GWHGAAZE008364

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDO63011.1	0	hypothetical protein CISIN_1g016098mg [Citrus sinensis]
Swissprot	tr\|P48578\|PP2A3_ARATH	0	Serine/threonine-protein phosphatase PP2A-3 catalytic subunit
trEMBL	tr\|A0A067FIH3\|A0A067FIH3_CITSI	0	Serine/threonine-protein phosphatase {ECO:0000256\|RuleBase:RU004273}
TAIR10	AT3G58500.1	6E-149	protein phosphatase 2A-4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	71815520	71823065	+
GWHAAZE00000002	mRNA	71815520	71823065	+
GWHAAZE00000002	exon	71815520	71815566	+
GWHAAZE00000002	exon	71816460	71816511	+
GWHAAZE00000002	exon	71817702	71817785	+
GWHAAZE00000002	exon	71818210	71818281	+
GWHAAZE00000002	exon	71820689	71820760	+
GWHAAZE00000002	exon	71821011	71821051	+
GWHAAZE00000002	exon	71821299	71821365	+
GWHAAZE00000002	exon	71822380	71822571	+
GWHAAZE00000002	exon	71822688	71822777	+
GWHAAZE00000002	exon	71822879	71822969	+
GWHAAZE00000002	exon	71823052	71823065	+
GWHAAZE00000002	CDS	71815520	71815566	+
GWHAAZE00000002	CDS	71816460	71816511	+
GWHAAZE00000002	CDS	71817702	71817785	+
GWHAAZE00000002	CDS	71818210	71818281	+
GWHAAZE00000002	CDS	71820689	71820760	+
GWHAAZE00000002	CDS	71821011	71821051	+
GWHAAZE00000002	CDS	71821299	71821365	+
GWHAAZE00000002	CDS	71822380	71822571	+
GWHAAZE00000002	CDS	71822688	71822777	+
GWHAAZE00000002	CDS	71822879	71822969	+
GWHAAZE00000002	CDS	71823052	71823065	+

Transcript Sequence
>GWHTAAZE008372 ATGTTGACTAAGTATGGGGTTGGTTATGGGCATGAGCAGGAGCACTGGGTGTTATGTGAGAAGGCTAAGGAGATTCTAATGGATGAAAGCAATGTCCAGCCTGTGAAAAGCCCTGTGACAATATGCGGTGATATTCATGGGCAATTTCATGATCTTGCGGAGCTTTTTCGGATTGGAGGGAAGTCTCCAGATACAAATTATTTGTTTATGGGAGACTATGTTGATCGAGGCTACTACTCAGTTGAAACAGTAACACTTCTGGTGGCCCTCAAAGTACGTTACCCTCAGCGGATTACTATTCTAAGAGGAAATCATGAGAGTCGTCAGATTACTCAAGTGTATGGGTTTTATGATGAATGTCTTAGAAAATATGGTAATGCGAATGTGTGGAAGGTCTTTACGGATTTATTTGATTATTTTCCGCTAACAGCATTGGTTGAGTCGGAAATATTTTGTCTCCATGGTGGTTTATCCCCCTCCATTGAAACTCTTGATAACATACGTAATTTTGACCGCGTCCAAGAAGTTCCTCACGAGGGACCCATGTGTGATCTTTTATGGTCTGACCCCGATGATCGTTGTGGTTGGGGTATCTCCCCAAGGGGTGCCGGTTATACTTTTGGGCAGGATATATCGGAGCAGTTTAACCATACCAACAATTTAAAGCTTATTGCTAGAGCGCATCAGCTAGTTATGGAGGGATACAACTGGGGACATGAACAAAAGGTTGTTACCATTTTTAGTGCACCTAACTATTGTTATCGATGCGGGAACATGGCATCTATTCTGGAAGTTGATGACTGCCAAGAATGTTGTGATTAA

Network for GWHGAAZE008364

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00149.29	Metallophos	38	229	7.50E-37

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04382	PPP2C	mRNA surveillance pathway	map03015
		MAPK signaling pathway - fly	map04013
		TGF-beta signaling pathway	map04350
		Hippo signaling pathway	map04390
		Hippo signaling pathway - fly	map04391
		Sphingolipid signaling pathway	map04071
		PI3K-Akt signaling pathway	map04151
		AMPK signaling pathway	map04152
		Autophagy - animal	map04140
		Autophagy - yeast	map04138
		Autophagy - other	map04136
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114
		Tight junction	map04530
		Adrenergic signaling in cardiomyocytes	map04261
		Dopaminergic synapse	map04728
		Long-term depression	map04730

Gene Ontology

GO term	Ontology	Name
GO:0016787	molecular_function	hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	35.571
	SRR3591706	second leaf	20.280
	SRR3591707	mature leaf	20.980
	SRR3591708	Shoot apex	30.265
	SRR3591709	Stem	33.193
	SRR3591710	White floral bud	21.930
	SRR3591711	White flower	25.940
	SRR3591712	Green floral bud	38.920
	SRR3591713	Yellow flower	22.493
SRP173429	SRR8316895	Juvenile bud stage	31.463
	SRR8316896	Juvenile bud stage	42.276
	SRR8316897	Juvenile bud stage	20.330
	SRR8316894	Third green stage	19.787
	SRR8316900	Third green stage	65.233
	SRR8316901	Third green stage	54.308
	SRR8316898	Complete white stage	24.955
	SRR8316899	Complete white stage	70.541
	SRR8316903	Complete white stage	30.124
	SRR8316902	Silver flowering stage	19.403
	SRR8316904	Silver flowering stage	25.845
	SRR8316905	Silver flowering stage	13.026
	SRR8316906	Gold flowering stage	45.342
	SRR8316907	Gold flowering stage	47.134
	SRR8316908	Gold flowering stage	40.675
SRP132670	SRR6706286	Control	63.372
	SRR6706287	Light intensity 50%	59.383
	SRR6706288	Light intensity 20%	66.615
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.819
	CNS0095593	Slightly white alabastrum(diploid) 2	29.505
	CNS0095594	Slightly white alabastrum(diploid) 3	31.098
	CNS0095595	Whole white alabastrum(diploid) 2	27.312
	CNS0095596	Whole white alabastrum(diploid) 3	32.003
	CNS0095597	Whole white alabastrum(diploid) 4	26.716
	CNS0095598	Silvery flower (diploied) 1	24.413
	CNS0095599	Silvery flower (diploied) 2	18.861
	CNS0095600	Silvery flower (diploied) 3	31.776
	CNS0095601	Golden flower (diploid) 1	18.916
	CNS0095602	Golden flower (diploid) 2	33.585
	CNS0095603	Golden flower (diploid) 3	32.490
	CNS0095604	Slightly white alabastrum(tetraploid) 1	35.661
	CNS0095605	Slightly white alabastrum(tetraploid) 2	31.490
	CNS0095606	Slightly white alabastrum(tetraploid) 3	39.277
	CNS0095607	Whole white alabastrum(tetraploid) 1	30.603
	CNS0095608	Whole white alabastrum(tetraploid) 2	24.345
	CNS0095609	Whole white alabastrum(tetraploid) 3	41.772
	CNS0095610	Silvery flower (tetraploid) 1	32.671
	CNS0095611	Silvery flower (tetraploid) 2	31.926
	CNS0095612	Silvery flower (tetraploid) 3	30.876
	CNS0095613	Golden flower (tetraploid) 1	20.579
	CNS0095614	Golden flower (tetraploid) 2	30.217
	CNS0095615	Golden flower (tetraploid) 3	31.003
CRA001975	CRR073297	Stem 1	40.448
	CRR073298	Stem 2	38.778
	CRR073299	Stem 3	40.797
	CRR073300	Leaf 1	40.928
	CRR073301	Leaf 2	41.690
	CRR073302	Leaf 3	51.445
	CRR073303	Juvenile bud 1	45.944
	CRR073304	Juvenile bud 2	47.250
	CRR073305	Juvenile bud 3	39.558
	CRR073306	Third green 1	20.858
	CRR073307	Third green 2	26.193
	CRR073308	Third green 3	24.919
	CRR073309	Second white 1	27.501
	CRR073310	Second white 2	23.046
	CRR073311	Second white 3	21.921
	CRR073312	Silver flowering 1	21.310
	CRR073313	Silver flowering 2	18.858
	CRR073314	Silver flowering 3	16.480
	CRR073315	Gold flowering 1	27.440
	CRR073316	Gold flowering 2	29.748
	CRR073317	Gold flowering 3	27.630
	CRR073318	Tawny withering 1	48.287
	CRR073319	Tawny withering 2	33.544
	CRR073320	Tawny withering 3	48.585