Gene detail

Detail information of GWHGAAZE008354

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008371998.1	1.82864E-19	PREDICTED: protein CUP-SHAPED COTYLEDON 2-like [Malus domestica]
Swissprot	tr\|O49255\|NAC29_ARATH	3E-12	NAC transcription factor 29
trEMBL	tr\|A0A059BFS8\|A0A059BFS8_EUCGR	1E-12	Uncharacterized protein {ECO:0000313\|EMBL:KCW64938.1}
TAIR10	AT1G61110.1	2E-11	NAC domain containing protein 25

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	71242511	71253470	+
GWHAAZE00000002	mRNA	71242511	71253470	+
GWHAAZE00000002	exon	71242511	71242835	+
GWHAAZE00000002	exon	71244101	71244172	+
GWHAAZE00000002	exon	71246954	71247098	+
GWHAAZE00000002	exon	71247410	71247615	+
GWHAAZE00000002	exon	71248653	71248746	+
GWHAAZE00000002	exon	71248857	71248993	+
GWHAAZE00000002	exon	71250925	71251108	+
GWHAAZE00000002	exon	71251405	71251610	+
GWHAAZE00000002	exon	71252085	71252190	+
GWHAAZE00000002	exon	71252276	71252490	+
GWHAAZE00000002	exon	71252682	71252886	+
GWHAAZE00000002	exon	71253214	71253470	+
GWHAAZE00000002	five_prime_UTR	71242511	71242835	+
GWHAAZE00000002	five_prime_UTR	71244101	71244172	+
GWHAAZE00000002	CDS	71246954	71247098	+
GWHAAZE00000002	CDS	71247410	71247615	+
GWHAAZE00000002	CDS	71248653	71248746	+
GWHAAZE00000002	CDS	71248857	71248993	+
GWHAAZE00000002	CDS	71250925	71251108	+
GWHAAZE00000002	CDS	71251405	71251610	+
GWHAAZE00000002	CDS	71252085	71252190	+
GWHAAZE00000002	CDS	71252276	71252490	+
GWHAAZE00000002	CDS	71252682	71252886	+
GWHAAZE00000002	CDS	71253214	71253470	+

Transcript Sequence
>GWHTAAZE008362 AAACGGCGCTCTCAGTTACAACTCTCTCTTCCACACCGATCTCCCCTCACAATCTCACTCTCAGACCTCACTCTCACTCTTGATGTAACCCTAAATCACTCGGTCCCCCTTCATCGCCCACCACCCTACGCCGTTCTCTCACTTGGCCGCAGAATGACCACCGGAAACCATAGCCTTTACCCATCCCTAAATTGAAACCCTAGCCTTATATTCATGCAAAAAAGCCCAACTCTCGGATGGACCTTTGAAGTTTTCACATTCACTGCCAATTGTAAGCTCGATTTCACAGATCGTAAGCTCGATTTCGACGAAGCTTTGAAGATTTGATCTTGCAGCAGACTTGAGCTTAACAGAGACTGTGTAATGCCTTTATACTCCTCAAGCATACTATAGCAAGATGGAATTGGAGGGTTTTGGTTACTGTCCAGACGAGGGAGAATTACTTCATTACCTCAGGCGCAAATGCGTGGGTAATCTATCGAAAGGCTGCCCCATTGAGACGGAAGAAGATGTCTACACTAAACATCCTCGACAGCTCATCGGTAAGTACCCACATATGGATGAACATGGTTGGTACTTTTTCACCCATCGCTTTGTAGAGAATCAGGGCCAATGGAGGACTTTTGGCAAAAAGGATTTTGTGTTTTATAAAGGCGAAAGAGTTGGTTCTAAGCAAGTGCTCGAGTTTTTTGAAGGGGGTGAGAGGACCAAGTATAAAATCATCGAGTACAACCTCGAGGGTGATAAGTTTGATGTCTGTGTTTGTAAGCTGTACGAGGATGGCTCGCAGTGTGGCTGTGTGGAGGCCGCTTTAAATGCGAAATCCATTAAGGATTTTATAGCTGCTGAAGCAGACGGAAATCTAAATGATAAATGCAATGAACTGATGCAGTACTGCCTTTGCAACCAGACATTCATCGGGGAGTATCATGTGATCGAACAAAGACTTAATCGGCTCGGGAAAACCTTTTCAAAGGAGATGGAATTGGAGAGTAAGCGAATATGCAATAGACGTGAGCCGTCGTTGGGTTTTGTTTTCCGTCCGGCCGATGGAATATTACTTGATCATTACCTCAGGAATAGATGCACGGGTAAACCTACGGAATACTGCCCCATCGAGATGGAAGTAGACGTCTACGCGAAAGATCCTCGACAGCTCATTAGTATGTACCCACATATGGGTGAGCATGTTTGGTACTTCTTCACCCCTAGCTTTGTAGAGAATCAGGGCCAATGGAGGACTTCTGGCAAAAAGGATTTTGTGTTTTATAAAGGCCAAAAAGTTGGTTCTAAGCAAGTGCTCAAGTTTTTTGAAGGGGGTCAGAAGACCAAGTATAAAATGATTGAGTACAACCTCGAGCGCGATAAGAATGATGTTTGTGTTTGTAAGCTGTATGAGGATGGGTCGTTGTGTAGCTGTGTGGAGTCCACTTTAAAAGAAGAACCCATTATGGCGACGACTAGGAGAAGGAAGATGTCTCTTTTCACCCGATCCCCTTTGCAAAAGAAGTTCAAGAAGGCGGACAGAGCAGCAGCTTCAGTGGAGAATATTACATTTGGGTGTTTGCAAGATCTAACTGAAAAATGCAAAGTACTGAGGCAACGATACATGATAAACCAGGCATCCCTTGAAGAGTATTATGAGGCCGAAAAAAGACTTTATTGGCTTTGGAAAGCCTTTTTGAAGAAGACGGAACTGGAGTGTTCGCAGATAGAACTGAAGATATGGCGAAATCGGGAAGAAGGTTATCAGTCGCTTGGTTTTATTTTCAGGCCAACAGAGGGATTCTTAGTTGATCACTACTTGAGGAAAGCACTCTTGGGTGAATTAGTGGAAGAATTATGCCCCATTTGTGATATTGAAGTTTGCAATTACCATCCTCGTGACCTCACCGAGATCTGCCCACACACCGGAAAAAATGTTCGGTACTTCTTCAGCTATTACCTTCCAGACAGAGTTAAGCAAGGTGCTCCAGACAGAGTTAATCAAGGCGCAAATAACCAGGGCCACTGGAGAATTAGTGGCCGAAAGAGTGCTGTCTATCATGAAGGCAAGAAAGTGGGTAACAAGCTACTATTGGAGTATTTCGAAGGCAATCAGAAGACCAAGTATAAGATCATCCAGTACAAGCTTGAGCCCGATCTGGTATAA

Network for GWHGAAZE008354

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	4	113	1.30E-12
PF02365.16	NAM	211	320	3.70E-17
PF02365.16	NAM	455	578	1.20E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.770
	SRR3591706	second leaf	8.687
	SRR3591707	mature leaf	10.135
	SRR3591708	Shoot apex	40.731
	SRR3591709	Stem	28.482
	SRR3591710	White floral bud	29.226
	SRR3591711	White flower	29.510
	SRR3591712	Green floral bud	29.763
	SRR3591713	Yellow flower	28.276
SRP173429	SRR8316895	Juvenile bud stage	5.828
	SRR8316896	Juvenile bud stage	8.072
	SRR8316897	Juvenile bud stage	1.295
	SRR8316894	Third green stage	3.107
	SRR8316900	Third green stage	8.004
	SRR8316901	Third green stage	5.789
	SRR8316898	Complete white stage	0.659
	SRR8316899	Complete white stage	6.370
	SRR8316903	Complete white stage	1.108
	SRR8316902	Silver flowering stage	0.349
	SRR8316904	Silver flowering stage	0.601
	SRR8316905	Silver flowering stage	0.150
	SRR8316906	Gold flowering stage	0.452
	SRR8316907	Gold flowering stage	0.435
	SRR8316908	Gold flowering stage	0.170
SRP132670	SRR6706286	Control	5.431
	SRR6706287	Light intensity 50%	5.057
	SRR6706288	Light intensity 20%	6.046
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.163
	CNS0095593	Slightly white alabastrum(diploid) 2	6.242
	CNS0095594	Slightly white alabastrum(diploid) 3	5.998
	CNS0095595	Whole white alabastrum(diploid) 2	5.597
	CNS0095596	Whole white alabastrum(diploid) 3	4.478
	CNS0095597	Whole white alabastrum(diploid) 4	5.619
	CNS0095598	Silvery flower (diploied) 1	3.482
	CNS0095599	Silvery flower (diploied) 2	2.846
	CNS0095600	Silvery flower (diploied) 3	2.331
	CNS0095601	Golden flower (diploid) 1	2.309
	CNS0095602	Golden flower (diploid) 2	2.382
	CNS0095603	Golden flower (diploid) 3	1.987
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.074
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.968
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.999
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.552
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.132
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.740
	CNS0095610	Silvery flower (tetraploid) 1	2.566
	CNS0095611	Silvery flower (tetraploid) 2	2.936
	CNS0095612	Silvery flower (tetraploid) 3	2.587
	CNS0095613	Golden flower (tetraploid) 1	1.305
	CNS0095614	Golden flower (tetraploid) 2	1.523
	CNS0095615	Golden flower (tetraploid) 3	0.463
CRA001975	CRR073297	Stem 1	6.439
	CRR073298	Stem 2	6.530
	CRR073299	Stem 3	6.444
	CRR073300	Leaf 1	5.815
	CRR073301	Leaf 2	4.051
	CRR073302	Leaf 3	3.333
	CRR073303	Juvenile bud 1	4.835
	CRR073304	Juvenile bud 2	3.538
	CRR073305	Juvenile bud 3	4.564
	CRR073306	Third green 1	0.265
	CRR073307	Third green 2	0.377
	CRR073308	Third green 3	0.377
	CRR073309	Second white 1	0.166
	CRR073310	Second white 2	0.142
	CRR073311	Second white 3	0.144
	CRR073312	Silver flowering 1	0.085
	CRR073313	Silver flowering 2	0.408
	CRR073314	Silver flowering 3	0.366
	CRR073315	Gold flowering 1	0.828
	CRR073316	Gold flowering 2	1.062
	CRR073317	Gold flowering 3	0.977
	CRR073318	Tawny withering 1	8.354
	CRR073319	Tawny withering 2	4.468
	CRR073320	Tawny withering 3	11.215