Gene detail

Detail information of GWHGAAZE008340

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009343156.1	4.96918E-78	PREDICTED: protein kinase APK1B, chloroplastic-like [Pyrus x bretschneideri]
Swissprot	tr\|Q9FE20\|PBS1_ARATH	4E-33	Serine/threonine-protein kinase PBS1
trEMBL	tr\|W9QW66\|W9QW66_9ROSA	1E-74	Serine/threonine-protein kinase BIK1 {ECO:0000313\|EMBL:EXB40298.1}
TAIR10	AT2G28590.1	2E-31	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	70367818	70370350	+
GWHAAZE00000002	mRNA	70367818	70370350	+
GWHAAZE00000002	exon	70367818	70368042	+
GWHAAZE00000002	exon	70368135	70368294	+
GWHAAZE00000002	exon	70368881	70369008	+
GWHAAZE00000002	exon	70369451	70369574	+
GWHAAZE00000002	exon	70370037	70370350	+
GWHAAZE00000002	CDS	70367818	70368042	+
GWHAAZE00000002	CDS	70368135	70368294	+
GWHAAZE00000002	CDS	70368881	70369008	+
GWHAAZE00000002	CDS	70369451	70369574	+
GWHAAZE00000002	CDS	70370037	70370350	+

Transcript Sequence
>GWHTAAZE008348 ATGGAGAACGAAAGGTGGTGTAGAGAGCCTATTTCATGTACATCGGAGGTCTTAGAAGCACTGACTGACAATTTCAAGGAAGAAAACTTCATTTCATTAACAACCTATGGTAAGGTGTATCGGGGAAAGGTTAAGCTCGATTCAATTGGAGCCGAAACAAGAGATGTGACCGTAAAGATTTGGGACGAGAAAGTACATGTTATTAATGATGGTAAAGTGGTTGATGAAGAAGTGAGATTCCTATCTCATTTTAGTATGAATCACCACCCCAACTTGGTGAGGTTGATAGGCTTTTCCAGCAATGGCTATCGTTACAAGGGACCAGTAACTGGTGTTGTCTATGATCTCAATTCGTTAGATACTTTGTATAATCACACTCTAAAAGACACTTTCTCTTGGATCCAAAGGATTAAAGTAGCCCTTGAATTTGCAAAGCTACTCGAATATCTGCATAACAGGGAACGGCCGTATGTGGTCTTCAATATTGATTCAACAAATATTATGCTTGATCAGGCCTACAATCCAATATTGATTGACTTTGGGCTGCTCAGTGGTGGGATTATGGGTGGACTACGTTTTGCACAGGAGTTTGGACATATGTCACCAGGCTACTGCGACCCATTTTATGCCAAATGCGGAATGAGGTGCATATGGAGCGACGTGTTTTCATTTGGTTTGATTTTGCTGGGGCTAATAGCTAAGAGAGTTGACTTAAAGGAGGACTTGGAAAAACGCAAGTATCAAAGATTGAATAAGTGGGCTACCGAAGTGTACAAGCACGGGTGCTCGCTTGTGCACCCTAACCTAAGGGAGGACAAGGATTTCGAGGAGTCCGATGGTATCAAGTTGACCGAGCTGGCAATGTGCTGTATACAAGTAGAAAAGGCAGAAGAGCCCTCAATGACTCAAGTTGTCAAGAGCCTTGAGAATTTAAGCTTTTCAAGTTCTTAG

Network for GWHGAAZE008340

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	34	245	9.30E-14

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.527
	SRR3591706	second leaf	0.073
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.343
	SRR3591709	Stem	0.543
	SRR3591710	White floral bud	0.481
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	1.022
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.932
	SRR8316896	Juvenile bud stage	2.033
	SRR8316897	Juvenile bud stage	0.498
	SRR8316894	Third green stage	0.350
	SRR8316900	Third green stage	0.784
	SRR8316901	Third green stage	1.942
	SRR8316898	Complete white stage	0.045
	SRR8316899	Complete white stage	0.278
	SRR8316903	Complete white stage	0.096
	SRR8316902	Silver flowering stage	0.061
	SRR8316904	Silver flowering stage	0.199
	SRR8316905	Silver flowering stage	0.102
	SRR8316906	Gold flowering stage	0.079
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.159
SRP132670	SRR6706286	Control	0.783
	SRR6706287	Light intensity 50%	0.106
	SRR6706288	Light intensity 20%	0.682
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.320
	CNS0095593	Slightly white alabastrum(diploid) 2	0.743
	CNS0095594	Slightly white alabastrum(diploid) 3	1.636
	CNS0095595	Whole white alabastrum(diploid) 2	1.978
	CNS0095596	Whole white alabastrum(diploid) 3	2.648
	CNS0095597	Whole white alabastrum(diploid) 4	2.213
	CNS0095598	Silvery flower (diploied) 1	0.260
	CNS0095599	Silvery flower (diploied) 2	0.445
	CNS0095600	Silvery flower (diploied) 3	0.341
	CNS0095601	Golden flower (diploid) 1	0.301
	CNS0095602	Golden flower (diploid) 2	0.134
	CNS0095603	Golden flower (diploid) 3	0.062
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.768
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.900
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.810
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.648
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.539
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.415
	CNS0095610	Silvery flower (tetraploid) 1	1.055
	CNS0095611	Silvery flower (tetraploid) 2	1.451
	CNS0095612	Silvery flower (tetraploid) 3	1.171
	CNS0095613	Golden flower (tetraploid) 1	0.289
	CNS0095614	Golden flower (tetraploid) 2	0.204
	CNS0095615	Golden flower (tetraploid) 3	0.199
CRA001975	CRR073297	Stem 1	1.357
	CRR073298	Stem 2	0.893
	CRR073299	Stem 3	2.274
	CRR073300	Leaf 1	1.293
	CRR073301	Leaf 2	1.875
	CRR073302	Leaf 3	0.771
	CRR073303	Juvenile bud 1	0.888
	CRR073304	Juvenile bud 2	0.612
	CRR073305	Juvenile bud 3	0.809
	CRR073306	Third green 1	0.809
	CRR073307	Third green 2	0.615
	CRR073308	Third green 3	0.170
	CRR073309	Second white 1	1.054
	CRR073310	Second white 2	0.082
	CRR073311	Second white 3	0.326
	CRR073312	Silver flowering 1	0.217
	CRR073313	Silver flowering 2	0.239
	CRR073314	Silver flowering 3	0.342
	CRR073315	Gold flowering 1	0.178
	CRR073316	Gold flowering 2	0.065
	CRR073317	Gold flowering 3	0.126
	CRR073318	Tawny withering 1	0.506
	CRR073319	Tawny withering 2	0.345
	CRR073320	Tawny withering 3	0.179