Detail information of GWHGAAZE008262


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrP28723.3FTHS_SPIOL0RecName: Full=Formate--tetrahydrofolate ligase; AltName: Full=10-formyletrahydrofolate synthetase; Short=FHS; Short=FTHFS; AltName: Full=Formyltetrahydrofolate synthetase [Spinacia oleracea]
Swissprottr|P28723|FTHS_SPIOL0Formate--tetrahydrofolate ligase
trEMBLtr|M5W4S7|M5W4S7_PRUPE0Uncharacterized protein {ECO:0000313|EMBL:EMJ08331.1}
TAIR10AT1G50480.1010-formyltetrahydrofolate synthetase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene6770317367706356-
GWHAAZE00000002mRNA6770317367706356-
GWHAAZE00000002exon6770317367703448-
GWHAAZE00000002exon6770386167704007-
GWHAAZE00000002exon6770450467705679-
GWHAAZE00000002exon6770634867706356-
GWHAAZE00000002CDS6770634867706356-
GWHAAZE00000002CDS6770450467705679-
GWHAAZE00000002CDS6770386167704007-
GWHAAZE00000002CDS6770317367703448-
Transcript Sequence

Network for GWHGAAZE008262

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01268.20FTHFS35353.60E-222
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01938fhs Metabolic pathways map01100
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Carbon fixation pathways in prokaryotesmap00720
One carbon pool by folatemap00670

Gene Ontology

GO term OntologyName
GO:0004329molecular_functionformate-tetrahydrofolate ligase activity
GO:0005524molecular_functionATP binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE008262.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3020406080100120140160180200Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf112.744
SRR3591706second leaf95.216
SRR3591707mature leaf93.351
SRR3591708Shoot apex75.628
SRR3591709Stem75.098
SRR3591710White floral bud83.391
SRR3591711White flower88.249
SRR3591712Green floral bud79.724
SRR3591713Yellow flower87.515
SRP173429 SRR8316895Juvenile bud stage 59.032
SRR8316896Juvenile bud stage 73.676
SRR8316897Juvenile bud stage 40.087
SRR8316894Third green stage 29.361
SRR8316900Third green stage 98.992
SRR8316901Third green stage 90.208
SRR8316898Complete white stage 39.310
SRR8316899Complete white stage 119.960
SRR8316903Complete white stage 55.167
SRR8316902Silver flowering stage29.475
SRR8316904Silver flowering stage36.016
SRR8316905Silver flowering stage17.457
SRR8316906Gold flowering stage 72.955
SRR8316907Gold flowering stage 60.979
SRR8316908Gold flowering stage 102.626
SRP132670SRR6706286Control93.154
SRR6706287Light intensity 50%86.553
SRR6706288Light intensity 20%86.793
CNP0000432CNS0095592Slightly white alabastrum(diploid) 160.409
CNS0095593Slightly white alabastrum(diploid) 261.531
CNS0095594Slightly white alabastrum(diploid) 351.546
CNS0095595Whole white alabastrum(diploid) 254.909
CNS0095596Whole white alabastrum(diploid) 378.921
CNS0095597Whole white alabastrum(diploid) 447.832
CNS0095598Silvery flower (diploied) 191.245
CNS0095599Silvery flower (diploied) 293.865
CNS0095600Silvery flower (diploied) 3119.553
CNS0095601Golden flower (diploid) 170.792
CNS0095602Golden flower (diploid) 2129.486
CNS0095603Golden flower (diploid) 3124.517
CNS0095604Slightly white alabastrum(tetraploid) 163.635
CNS0095605Slightly white alabastrum(tetraploid) 255.622
CNS0095606Slightly white alabastrum(tetraploid) 3105.071
CNS0095607Whole white alabastrum(tetraploid) 142.807
CNS0095608Whole white alabastrum(tetraploid) 231.629
CNS0095609Whole white alabastrum(tetraploid) 397.082
CNS0095610Silvery flower (tetraploid) 1130.108
CNS0095611Silvery flower (tetraploid) 2130.423
CNS0095612Silvery flower (tetraploid) 3108.875
CNS0095613Golden flower (tetraploid) 161.266
CNS0095614Golden flower (tetraploid) 2111.262
CNS0095615Golden flower (tetraploid) 374.242
CRA001975CRR073297Stem 1101.113
CRR073298Stem 289.415
CRR073299Stem 3117.153
CRR073300Leaf 195.659
CRR073301Leaf 2104.437
CRR073302Leaf 3108.551
CRR073303Juvenile bud 1141.650
CRR073304Juvenile bud 2117.261
CRR073305Juvenile bud 3174.038
CRR073306Third green 149.307
CRR073307Third green 250.340
CRR073308Third green 352.917
CRR073309Second white 169.252
CRR073310Second white 255.847
CRR073311Second white 343.981
CRR073312Silver flowering 152.891
CRR073313Silver flowering 268.641
CRR073314Silver flowering 355.365
CRR073315Gold flowering 189.941
CRR073316Gold flowering 2108.003
CRR073317Gold flowering 3111.985
CRR073318Tawny withering 196.932
CRR073319Tawny withering 271.979
CRR073320Tawny withering 368.368