Gene detail

Detail information of GWHGAAZE008215

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP14099.1	4.5763E-168	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8RWR1\|JMJ30_ARATH	6E-154	Putative lysine-specific demethylase JMJD5
trEMBL	tr\|A0A068V0R7\|A0A068V0R7_COFCA	2E-168	Coffea canephora DH200=94 genomic scaffold, scaffold_79 {ECO:0000313\|EMBL:CDP14099.1}
TAIR10	AT3G20810.1	5E-122	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	65383951	65392085	-
GWHAAZE00000002	mRNA	65383951	65392085	-
GWHAAZE00000002	exon	65391750	65392085	-
GWHAAZE00000002	exon	65388030	65388239	-
GWHAAZE00000002	exon	65386541	65386684	-
GWHAAZE00000002	exon	65384944	65385036	-
GWHAAZE00000002	exon	65383951	65384115	-
GWHAAZE00000002	CDS	65391750	65392085	-
GWHAAZE00000002	CDS	65388030	65388239	-
GWHAAZE00000002	CDS	65386541	65386684	-
GWHAAZE00000002	CDS	65384944	65385036	-
GWHAAZE00000002	CDS	65383951	65384115	-

Transcript Sequence
>GWHTAAZE008223 ATGTTCGCCCTTGCCTCCACCGACGTCCGGGCGGCAGAGGCGGCGCGTGAGATGGCGTGGGAGCAGCTCCACTCCGGTCCGTGGCACTCTGTGGTTCCAGCCTGGCGAGACGCGTATGCGATGGCGTGCTTGCACGTGGCCAAGTTTCATTATGCGAATTGTGAGTTTGTTGAGGCGCTTAGGGTTTTGGATATGGGGATGATTATGGGCGGCAATACTCTTAGGGAGGATTTGGATTCTGCTATTCAAATGGTTTCGGATAAAGCGAGGGGTGGTATTGAGGATAATGGCAAATTTGAAAGGCAGATTGTTGAGGAAAAATTTGACGTGGCTGAGGTTGTTCAGAATTTGCCCAAGAATTCACTGTCTTGTAAGAATGTTGTGAAAAGATCTGCTTTATCCTTAGAAGGGTTCTTGCGTGACTATTTCCTCAAAGGTTCACCAGTTATATTAAGTGATTGTATGGCTCACTGGCCAGCTAGAGCTAAATGGAATGACATTAATTACCTTAAAAATGTTGCTGGCTACCGCACTGTTCCAGTCGAGATACAAGAGCTAAGGAGGGACATTATCATCCCTGACTACTGTTTTGCCGGTGGCGGAGAGATCAGGTCACTCAATGCTTGGTTCGGTCCAGCAGGGACGGTGACACCCTTGCACCATGATCCACACCATAATATACTTGCTCAGGTTGTGGGCAAAAAGTATATAAGGCTTTACCCTGCTTCACTGTCAGAAGAGCTTTATCCACACACTGATTCCATGCTTAGCAATTCTAGTCAGGTTGATCTTGACAACATAGACGAGGAAGAGTTTCCAAAAGTGGTGGACCTTGAATTTATAGATTGCATTTTAGAGGAAGGTGAAATGCTTTATATCCCTCCCAAATGGTGGCACTACGTTCGTTCTCTCACTACCAGTTTCTCCGTTAGCTTCTGGTGGAGCTGA

Network for GWHGAAZE008215

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13621.7	Cupin_8	182	314	4.10E-34

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Jumonji

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.088
	SRR3591706	second leaf	0.377
	SRR3591707	mature leaf	1.009
	SRR3591708	Shoot apex	2.174
	SRR3591709	Stem	1.473
	SRR3591710	White floral bud	0.258
	SRR3591711	White flower	1.174
	SRR3591712	Green floral bud	0.964
	SRR3591713	Yellow flower	0.271
SRP173429	SRR8316895	Juvenile bud stage	0.985
	SRR8316896	Juvenile bud stage	2.063
	SRR8316897	Juvenile bud stage	0.365
	SRR8316894	Third green stage	0.515
	SRR8316900	Third green stage	0.536
	SRR8316901	Third green stage	0.584
	SRR8316898	Complete white stage	0.045
	SRR8316899	Complete white stage	0.626
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.210
	SRR8316904	Silver flowering stage	0.033
	SRR8316905	Silver flowering stage	0.081
	SRR8316906	Gold flowering stage	0.345
	SRR8316907	Gold flowering stage	0.199
	SRR8316908	Gold flowering stage	0.341
SRP132670	SRR6706286	Control	0.222
	SRR6706287	Light intensity 50%	0.320
	SRR6706288	Light intensity 20%	0.141
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.359
	CNS0095593	Slightly white alabastrum(diploid) 2	0.231
	CNS0095594	Slightly white alabastrum(diploid) 3	1.273
	CNS0095595	Whole white alabastrum(diploid) 2	0.654
	CNS0095596	Whole white alabastrum(diploid) 3	0.913
	CNS0095597	Whole white alabastrum(diploid) 4	0.400
	CNS0095598	Silvery flower (diploied) 1	1.629
	CNS0095599	Silvery flower (diploied) 2	0.229
	CNS0095600	Silvery flower (diploied) 3	0.325
	CNS0095601	Golden flower (diploid) 1	1.026
	CNS0095602	Golden flower (diploid) 2	0.133
	CNS0095603	Golden flower (diploid) 3	0.185
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.232
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.608
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.953
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.436
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.870
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.251
	CNS0095610	Silvery flower (tetraploid) 1	0.389
	CNS0095611	Silvery flower (tetraploid) 2	0.740
	CNS0095612	Silvery flower (tetraploid) 3	17.844
	CNS0095613	Golden flower (tetraploid) 1	0.817
	CNS0095614	Golden flower (tetraploid) 2	0.212
	CNS0095615	Golden flower (tetraploid) 3	0.109
CRA001975	CRR073297	Stem 1	10.406
	CRR073298	Stem 2	7.614
	CRR073299	Stem 3	6.821
	CRR073300	Leaf 1	3.324
	CRR073301	Leaf 2	3.827
	CRR073302	Leaf 3	2.032
	CRR073303	Juvenile bud 1	2.081
	CRR073304	Juvenile bud 2	0.817
	CRR073305	Juvenile bud 3	3.140
	CRR073306	Third green 1	0.213
	CRR073307	Third green 2	0.605
	CRR073308	Third green 3	1.773
	CRR073309	Second white 1	2.890
	CRR073310	Second white 2	1.502
	CRR073311	Second white 3	1.721
	CRR073312	Silver flowering 1	0.765
	CRR073313	Silver flowering 2	1.287
	CRR073314	Silver flowering 3	3.105
	CRR073315	Gold flowering 1	31.514
	CRR073316	Gold flowering 2	42.879
	CRR073317	Gold flowering 3	24.645
	CRR073318	Tawny withering 1	10.769
	CRR073319	Tawny withering 2	18.696
	CRR073320	Tawny withering 3	11.229