Detail information of GWHGAAZE008187


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009624984.10PREDICTED: probable copper-transporting ATPase HMA5 [Nicotiana tomentosiformis]
Swissprottr|Q9SH30|HMA5_ARATH0Probable copper-transporting ATPase HMA5
trEMBLtr|B9RIA4|B9RIA4_RICCO0Copper-transporting atpase p-type, putative {ECO:0000313|EMBL:EEF48876.1}
TAIR10AT1G63440.10heavy metal atpase 5

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene6454919664558206-
GWHAAZE00000002mRNA6454919664558206-
GWHAAZE00000002exon6454919664549588-
GWHAAZE00000002exon6455050164550986-
GWHAAZE00000002exon6455235764552479-
GWHAAZE00000002exon6455312164553375-
GWHAAZE00000002exon6455460364554770-
GWHAAZE00000002exon6455487364554945-
GWHAAZE00000002exon6455505964555343-
GWHAAZE00000002exon6455573564556480-
GWHAAZE00000002exon6455791964558206-
GWHAAZE00000002CDS6455791964558206-
GWHAAZE00000002CDS6455573564556480-
GWHAAZE00000002CDS6455505964555343-
GWHAAZE00000002CDS6455487364554945-
GWHAAZE00000002CDS6455460364554770-
GWHAAZE00000002CDS6455312164553375-
GWHAAZE00000002CDS6455235764552479-
GWHAAZE00000002CDS6455050164550986-
GWHAAZE00000002CDS6454919664549588-
Transcript Sequence

Network for GWHGAAZE008187

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00403.27HMA501094.40E-07
PF00403.27HMA1241833.30E-11
PF00122.21E1-E2_ATPase4405893.10E-36
PF00702.27Hydrolase6068316.40E-47
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K17686copA, ctpA, ATP7 MAPK signaling pathway - plant map04016

Gene Ontology

GO term OntologyName
GO:0006812biological_processcation transport
GO:0030001biological_processmetal ion transport
GO:0016021cellular_componentintegral component of membrane
GO:0000166molecular_functionnucleotide binding
GO:0019829molecular_functionATPase-coupled cation transmembrane transporter activity
GO:0046872molecular_functionmetal ion binding
GO:0005507molecular_functioncopper ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.718
SRR3591706second leaf19.327
SRR3591707mature leaf6.296
SRR3591708Shoot apex17.246
SRR3591709Stem19.086
SRR3591710White floral bud9.927
SRR3591711White flower8.610
SRR3591712Green floral bud9.580
SRR3591713Yellow flower12.261
SRP173429 SRR8316895Juvenile bud stage 8.161
SRR8316896Juvenile bud stage 9.542
SRR8316897Juvenile bud stage 2.828
SRR8316894Third green stage 5.694
SRR8316900Third green stage 14.498
SRR8316901Third green stage 17.280
SRR8316898Complete white stage 3.118
SRR8316899Complete white stage 22.129
SRR8316903Complete white stage 6.457
SRR8316902Silver flowering stage6.123
SRR8316904Silver flowering stage6.462
SRR8316905Silver flowering stage3.991
SRR8316906Gold flowering stage 12.580
SRR8316907Gold flowering stage 12.206
SRR8316908Gold flowering stage 13.200
SRP132670SRR6706286Control8.441
SRR6706287Light intensity 50%8.272
SRR6706288Light intensity 20%7.337
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.852
CNS0095593Slightly white alabastrum(diploid) 26.669
CNS0095594Slightly white alabastrum(diploid) 36.492
CNS0095595Whole white alabastrum(diploid) 26.869
CNS0095596Whole white alabastrum(diploid) 36.494
CNS0095597Whole white alabastrum(diploid) 43.373
CNS0095598Silvery flower (diploied) 13.308
CNS0095599Silvery flower (diploied) 24.045
CNS0095600Silvery flower (diploied) 37.037
CNS0095601Golden flower (diploid) 13.444
CNS0095602Golden flower (diploid) 26.493
CNS0095603Golden flower (diploid) 35.542
CNS0095604Slightly white alabastrum(tetraploid) 15.107
CNS0095605Slightly white alabastrum(tetraploid) 23.420
CNS0095606Slightly white alabastrum(tetraploid) 312.952
CNS0095607Whole white alabastrum(tetraploid) 12.185
CNS0095608Whole white alabastrum(tetraploid) 21.098
CNS0095609Whole white alabastrum(tetraploid) 36.397
CNS0095610Silvery flower (tetraploid) 13.941
CNS0095611Silvery flower (tetraploid) 23.493
CNS0095612Silvery flower (tetraploid) 32.751
CNS0095613Golden flower (tetraploid) 11.641
CNS0095614Golden flower (tetraploid) 22.735
CNS0095615Golden flower (tetraploid) 33.274
CRA001975CRR073297Stem 16.194
CRR073298Stem 26.531
CRR073299Stem 37.031
CRR073300Leaf 19.475
CRR073301Leaf 210.073
CRR073302Leaf 39.648
CRR073303Juvenile bud 111.244
CRR073304Juvenile bud 24.163
CRR073305Juvenile bud 313.827
CRR073306Third green 17.221
CRR073307Third green 27.870
CRR073308Third green 39.103
CRR073309Second white 12.854
CRR073310Second white 24.154
CRR073311Second white 33.758
CRR073312Silver flowering 14.951
CRR073313Silver flowering 25.286
CRR073314Silver flowering 33.911
CRR073315Gold flowering 13.342
CRR073316Gold flowering 24.771
CRR073317Gold flowering 32.575
CRR073318Tawny withering 15.577
CRR073319Tawny withering 27.624
CRR073320Tawny withering 38.842