Gene detail

Detail information of GWHGAAZE008174

Functional Annotation

Database	Orthologs	Annotation
Nr	CBI16402.3	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q9SH30\|HMA5_ARATH	Probable copper-transporting ATPase HMA5
trEMBL	tr\|B9RIA4\|B9RIA4_RICCO	Copper-transporting atpase p-type, putative {ECO:0000313\|EMBL:EEF48876.1}
TAIR10	AT1G63440.1	heavy metal atpase 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	63594830	63603782	-
GWHAAZE00000002	mRNA	63594830	63603782	-
GWHAAZE00000002	exon	63594830	63595222	-
GWHAAZE00000002	exon	63596132	63596617	-
GWHAAZE00000002	exon	63597989	63598111	-
GWHAAZE00000002	exon	63598745	63598999	-
GWHAAZE00000002	exon	63600191	63600358	-
GWHAAZE00000002	exon	63600461	63600932	-
GWHAAZE00000002	exon	63601609	63601759	-
GWHAAZE00000002	exon	63601866	63602058	-
GWHAAZE00000002	exon	63603495	63603782	-
GWHAAZE00000002	CDS	63603495	63603782	-
GWHAAZE00000002	CDS	63601866	63602058	-
GWHAAZE00000002	CDS	63601609	63601759	-
GWHAAZE00000002	CDS	63600461	63600932	-
GWHAAZE00000002	CDS	63600191	63600358	-
GWHAAZE00000002	CDS	63598745	63598999	-
GWHAAZE00000002	CDS	63597989	63598111	-
GWHAAZE00000002	CDS	63596132	63596617	-
GWHAAZE00000002	CDS	63594830	63595222	-

Transcript Sequence
>GWHTAAZE008182 ATGCCGACCCTCAAATTTTGGGACAAAAAGTTGGATGTTAAGGGGATGGATGAGTTGAAGTCACCTCTTTTGCAACCCCCAAACGGTGTTGCAGCTACTGTTGCTCAGCCAGTTTCCAATGCAGATAAAACAACTAAAACGATTATGTTTAAAGTAAGTGGTATCCGGCATGAATCTTCTCCAAATTCTATAGACTCTATTCTCGGAAAGCTGAATGGTGTCGAGAGTGTTATGGTCTCACAGCTTCAAGGCCAGGCTGTTGTCAGATACATGCCAGAACTCATTACTGCAAAAAAAATAAAAGAAACCGTGGAAGAAGCTGGTTTTCAAGTAGATGAATTTCCAGAGCAAGAGATAGCTGTGTGCCGACTCAGAATTAAAGGAATGGCATGCACGAGCTGCTCAGAGTCAGCCGAGCGTGCCCTTTCAATGGTTGAGGGAGTGAGAAAGGCAGTGGTGGGTCTAGCTCTCAAGAAGCAAATGCATTTGAAAGTAGAAGGAATAAATTCTCCAGATGATTTTACTGTTATTCAACGTTCACTTGAGTTGCTTGAAGGTGTAAATCATTTTGAAATGGACTTTGAAGAACATATAGTGACTGTTAGCTATGATGCTGACATCATTGGTCCTAGGTTTTATGTGGGATCGTATCATGCTCTGAGACGAAGATCTGCTAATATGGAGGTTCTGGTTGCATTGGGGACTAACGCTGCTTATTTTTATTCGGTGTATATACTAATAAAAGCATTGGCTTCAGATACATTTGAGGGTGAAGATCTATTTGAGACTAGTTCCATGTTGATATCATTTATTCTCCTTGGAAAATACTTGGAGGTCATTGCTAGAGGAAAGACATCAGATGCTTTGGCAAAGTTGACTGACCTTGCTCCCGAAACAGCTTGCTTGTTAACATTAGGGGTAGATGGAAATGTTATTTCAGAGATGGAAATTAGCACTCAATTGATACAAAGGGATGATATTATTAAGATTGTTCCTGGGGAAAAGGTACCTGTTGATGGTGTTGTTTTTAGCGGTCAGAGTCATGTGAATGAAAGTATGATAACAGGAGAAGCAAGGCCTGTTGCTAAAAGACCTGGTGACAAGGTTATTGGCGGGACTGTGAATGAGAATGGATGCGTGCTAGTTAAGGCAACTCATGTTGGATCAGAGACTGCACTTTCTCAGATTGTTCAAATAGTCGAAGCTGCTCAGCTTGCCAGAGCACCAGTGCAAAAGCTAGCTGACCAGATATCAAAGTTTTTTGTACCTGCAGTTGTTTTAGCAGCATTTATAACCTGGCTGGGATGGTTTATCCCTGGAGAAGCTGGGATTTACCCTAGAAGTTGGATACCAAAAGCTATGGATGAATTTGAGCTGGCACTCCAATTTGGTATTTCAGTCTTGGTGATTGCATGCCCCTGCGCTCTTGGACTAGCAACCCCTACTGCAGTCATGGTCGCCACAGGAAAGGGTGCTTCACAAGGTGTGCTTATCAAGGGTGGAAATTCTCTTGAGAAAGCTCACAAGGTGAATACAGTTGTCTTTGACAAAACGGGGACATTGACAATTGGAAAACCAATAGTTGTTAGTGCTGTGCTCTTTTCGAACTCTTCTATGGAGGAATTCTGCGACATTGCTATTGCTGCTGAGGCAAACAGTGAGCACCCAATAGCAAAAGCCGTTGTGGAGCATGCTAAGAAGTTCTCCTTGAAATACAGTTCTCAAACTGAACACGTGACCGAGGTGAAGGATTTTGAGGTGCACCCTGGTGCTGGTGTTGGCGGTAAAGTCGGAGATAGAACAGTCTTAGTTGGGAACAAGAGGCTGATGCAGGTTAATAACGTCCCTGTGGGTCCCGATGTTGATGACTACATGTTGGAAAATGAGCAGCAGGCTCGTACATGTGTGCTAGTTGCCATTGATGGTAGAGTTGCTGGTGCTTTTGCTGTGACTGATCCGGTTAAACCTGAGGCTGCACGTGTTATATCATTTCTCCGCTCAATGAATATCGAAAGTATTATGGTCACTGGTGATAATATGGCTACAGCAACTTCAATAGGGAGGGAGGTTGGAATTGATAAGGTTTTTGCTGAGACTGATCCGTTGGGAAAAGCAAATAAGATTAAAGAGTTGCAGGCGAAAGGTAGGATCGTGGCAATGGTGGGGGATGGAATCAACGACTCTCCAGCATTAGTAGCAGCCGATGTTGGCATGGCGATTGGCGTGGGGACTGATGTAGCAATAGAAGCAGCCGATATTGTGTTAATCAAGAGCAACTTGGAAGACGTAATCACAGCCATTGATCTCTCCAAGAAAACAATATCGCGTATCCGGCTCAACTATGTATGGGCCCTCGGATACAATGTCCTAGGCATGCCGATTGCTGCCGGGATCCTCTTCCCGTTCACCGGAATCCGGCTACCACCATGGCTCGCCGGAGCTTGCATGGCCGCTTCCTCCATTAGTGTGGTTTGTTCTTCACTCCTCTTGCAGTCTTATAAGAAGCCTTTGAATGTTGAACATGTTTAA

Network for GWHGAAZE008174

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00403.27	HMA	50	109	1.00E-07
PF00122.21	E1-E2_ATPase	313	493	1.60E-47
PF00702.27	Hydrolase	510	735	5.40E-47

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K17686	copA, ctpA, ATP7	MAPK signaling pathway - plant	map04016

Gene Ontology

GO term	Ontology	Name
GO:0030001	biological_process	metal ion transport
GO:0006812	biological_process	cation transport
GO:0016021	cellular_component	integral component of membrane
GO:0000166	molecular_function	nucleotide binding
GO:0046872	molecular_function	metal ion binding
GO:0019829	molecular_function	ATPase-coupled cation transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	35.206
	SRR3591706	second leaf	38.526
	SRR3591707	mature leaf	11.552
	SRR3591708	Shoot apex	39.583
	SRR3591709	Stem	46.131
	SRR3591710	White floral bud	18.064
	SRR3591711	White flower	16.051
	SRR3591712	Green floral bud	21.482
	SRR3591713	Yellow flower	19.628
SRP173429	SRR8316895	Juvenile bud stage	7.896
	SRR8316896	Juvenile bud stage	9.954
	SRR8316897	Juvenile bud stage	5.502
	SRR8316894	Third green stage	4.925
	SRR8316900	Third green stage	15.223
	SRR8316901	Third green stage	16.235
	SRR8316898	Complete white stage	3.075
	SRR8316899	Complete white stage	24.276
	SRR8316903	Complete white stage	6.712
	SRR8316902	Silver flowering stage	7.023
	SRR8316904	Silver flowering stage	6.951
	SRR8316905	Silver flowering stage	3.298
	SRR8316906	Gold flowering stage	12.659
	SRR8316907	Gold flowering stage	11.113
	SRR8316908	Gold flowering stage	19.484
SRP132670	SRR6706286	Control	10.284
	SRR6706287	Light intensity 50%	9.709
	SRR6706288	Light intensity 20%	8.701
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.244
	CNS0095593	Slightly white alabastrum(diploid) 2	9.169
	CNS0095594	Slightly white alabastrum(diploid) 3	8.668
	CNS0095595	Whole white alabastrum(diploid) 2	8.889
	CNS0095596	Whole white alabastrum(diploid) 3	7.685
	CNS0095597	Whole white alabastrum(diploid) 4	4.365
	CNS0095598	Silvery flower (diploied) 1	3.787
	CNS0095599	Silvery flower (diploied) 2	5.581
	CNS0095600	Silvery flower (diploied) 3	6.583
	CNS0095601	Golden flower (diploid) 1	3.625
	CNS0095602	Golden flower (diploid) 2	6.202
	CNS0095603	Golden flower (diploid) 3	5.552
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.966
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.607
	CNS0095606	Slightly white alabastrum(tetraploid) 3	33.836
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.867
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.757
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.912
	CNS0095610	Silvery flower (tetraploid) 1	11.739
	CNS0095611	Silvery flower (tetraploid) 2	8.392
	CNS0095612	Silvery flower (tetraploid) 3	6.289
	CNS0095613	Golden flower (tetraploid) 1	5.592
	CNS0095614	Golden flower (tetraploid) 2	6.747
	CNS0095615	Golden flower (tetraploid) 3	6.340
CRA001975	CRR073297	Stem 1	5.984
	CRR073298	Stem 2	5.846
	CRR073299	Stem 3	8.634
	CRR073300	Leaf 1	10.643
	CRR073301	Leaf 2	10.095
	CRR073302	Leaf 3	11.950
	CRR073303	Juvenile bud 1	13.018
	CRR073304	Juvenile bud 2	4.934
	CRR073305	Juvenile bud 3	18.335
	CRR073306	Third green 1	7.357
	CRR073307	Third green 2	6.972
	CRR073308	Third green 3	8.350
	CRR073309	Second white 1	4.395
	CRR073310	Second white 2	2.919
	CRR073311	Second white 3	4.139
	CRR073312	Silver flowering 1	4.690
	CRR073313	Silver flowering 2	5.106
	CRR073314	Silver flowering 3	4.120
	CRR073315	Gold flowering 1	3.382
	CRR073316	Gold flowering 2	5.770
	CRR073317	Gold flowering 3	3.256
	CRR073318	Tawny withering 1	6.386
	CRR073319	Tawny withering 2	8.735
	CRR073320	Tawny withering 3	7.369