Gene detail

Detail information of GWHGAAZE008151

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011025641.1	7.61164E-37	PREDICTED: uncharacterized protein LOC105126470 [Populus euphratica]
Swissprot	tr\|Q39013\|NAC2_ARATH	2E-29	NAC domain-containing protein 2
trEMBL	tr\|M5X9E7\|M5X9E7_PRUPE	4E-37	Uncharacterized protein {ECO:0000313\|EMBL:EMJ15685.1}
TAIR10	AT1G01720.1	3E-26	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	62799338	62802032	+
GWHAAZE00000002	mRNA	62799338	62802032	+
GWHAAZE00000002	exon	62799338	62799646	+
GWHAAZE00000002	exon	62799932	62800858	+
GWHAAZE00000002	exon	62800980	62801232	+
GWHAAZE00000002	exon	62801560	62801771	+
GWHAAZE00000002	exon	62801847	62802032	+
GWHAAZE00000002	CDS	62799338	62799646	+
GWHAAZE00000002	CDS	62799932	62800858	+
GWHAAZE00000002	CDS	62800980	62801232	+
GWHAAZE00000002	CDS	62801560	62801771	+
GWHAAZE00000002	CDS	62801847	62802032	+

Transcript Sequence
>GWHTAAZE008159 ATGCATTTGACTTTAGAACTTGCAGAGCGTTATGATATAATGGAAGAAAAAGAGATGTACTTCTTTACTCCACGGGATCGAAAGTATAAAAGAGGGGCACGACCAAATCGAGCAGCTGGTAATGGTTATTGGAAGCCCACAGGAGCTGAAAGGAAGGTAAAACATAAGGGTAAAATCATCGGTCATGTTAGAAGATTGGTTTACTATGAAGGACAATCTTGCAAAGGGGACAAGACCAATTGGAAGATGCAAGAATTTAGAGTCGAAGGCACTCCAGCTAGAGTAAAAACATCTCCCGATGACATGAGGTTGGATGATTGGGTTCTATGCCTGATTTATGAAAGAACTGGTAAGTGGAGGAGAGCAGGAGAAAGAGATGATGATGATGACGACGGTGATGAGCCTGCTGAGAGGAACAATGATAATAACTCAGAAATGAGCAACAATCTCAATCAAATTGGGGACACAAATGTGCTAGTTAACAACCCATCGAATGAGTATATTCCACCTGATATTGATGTGGCTCTATCTCAACTTCCCCAGTTCGACGACTATCCCTCTAACATCCCGAATTTCATTGGTACTCACATTCCTAATCATTCGGCTCAACCCATTTCATATAGTCACCGTGATCCTAATCATTTTCAACCTGCTTCATATGGTCACCCTGATCTTAATCTTCATTCAACTCAAACTGCTTCATATAGTCACCCGGATCCTAATCAGCATTTGGTTCAACCCACTGAATATAGTCACCCGGATCCAACTCATCATTTGGCTCGACCAACTTCATATAGTTACCTGGATCCTAATCATTCAGTTCGACCTGTTTATAGGCAGTCGGATCTTAATCATCTTTCTGCTCAGCCCGCTTCACATAGTCACCTGTATCCTACTCATCATTCGGCTCGACCCACTTCTAATAGTTACCTGGATCCTAATCGTTCAGTTCAACCAGTTACAAATAGGGAGCCGGATCCTAATCATCCGTTGGCTCGACATGCTTCACATAGTCACCTGTATCCTAATCATTCAGTCCGACCTGTTACAAATAGGGAGCCAGATCCTAGTCATCTTTCAGCTCGACCCACTTCACATAGTCACCTGTATCCTACTCATCATTCTGCTGGACCCACTTCGTATAGTTACCTGGATCCTAATCGTTCAGTTCTACCTGTTACAAATAGGGAGCCGGATCCTAATCATCCGTCGGCTCGACATGCTTCACAGTCACCTGAGGACATTATCAGGTCGAGGAACATAAAAGATGTTTGGTTTCCCAATGTTCAGGAGAATGTTTGGGGAATTGGTCCTAGTTACTCCTATTTTGATTATCCCAAACCCCTTATGGAATTGGATACTTTGGACAACAATGACCCAAATTTATATCCTAATTTGGTCAACAATGAAGCCCTAAATAATTTTCTAGCCCCAACAGAAGATAGTTCCACAAATAATGCTCCAGACCTAGAAGATAATAACACTCGAGTGCAGCAGCGCTTTGGAGTGATTTCATCATTTTGTTCTAGTTTTAATTCTCTCAAAGCTACTGTTGTACAAATGTGCTTTTGTTTGTTGCTCCATTTGGAATTCGTGGAACAAGTTCATGCGTTCAGGGATTTCTATGAGGCTAGTTCGGATGATGTGATTTCCGTTTCACCCTCAAGGGAGTCTGTTGGTTGGATTGCCCGGTTTCAGATGGGAGTGAACTTGCAAGCTTTTGGCAATAGTTCTTCGGCTCCCTCGATTGTTGTCGCGAAGGATATGTCAGTTAGAGAAGCCTCTTTGATTTGTGTTAGAACTGGCTTGTCTTGTGTTTCGCTGGAGAATGATAATGCAGTTGTCGTTCCTTGGTGTTTTGAAGACATCCCTAATTCGACATGGTAA

Network for GWHGAAZE008151

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	14	88	1.80E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.462
	SRR3591706	second leaf	0.561
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	2.989
	SRR3591709	Stem	1.338
	SRR3591710	White floral bud	0.100
	SRR3591711	White flower	0.128
	SRR3591712	Green floral bud	0.348
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.491
	SRR8316896	Juvenile bud stage	1.004
	SRR8316897	Juvenile bud stage	0.413
	SRR8316894	Third green stage	0.609
	SRR8316900	Third green stage	0.904
	SRR8316901	Third green stage	0.796
	SRR8316898	Complete white stage	0.066
	SRR8316899	Complete white stage	1.166
	SRR8316903	Complete white stage	0.272
	SRR8316902	Silver flowering stage	0.012
	SRR8316904	Silver flowering stage	0.054
	SRR8316905	Silver flowering stage	0.029
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.150
SRP132670	SRR6706286	Control	0.291
	SRR6706287	Light intensity 50%	0.625
	SRR6706288	Light intensity 20%	0.517
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.278
	CNS0095593	Slightly white alabastrum(diploid) 2	1.158
	CNS0095594	Slightly white alabastrum(diploid) 3	0.789
	CNS0095595	Whole white alabastrum(diploid) 2	0.900
	CNS0095596	Whole white alabastrum(diploid) 3	1.254
	CNS0095597	Whole white alabastrum(diploid) 4	0.679
	CNS0095598	Silvery flower (diploied) 1	0.972
	CNS0095599	Silvery flower (diploied) 2	0.335
	CNS0095600	Silvery flower (diploied) 3	0.264
	CNS0095601	Golden flower (diploid) 1	0.216
	CNS0095602	Golden flower (diploid) 2	0.237
	CNS0095603	Golden flower (diploid) 3	0.546
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.007
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.734
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.150
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.365
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.328
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.414
	CNS0095610	Silvery flower (tetraploid) 1	0.231
	CNS0095611	Silvery flower (tetraploid) 2	0.123
	CNS0095612	Silvery flower (tetraploid) 3	0.096
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.995
	CRR073298	Stem 2	1.154
	CRR073299	Stem 3	0.222
	CRR073300	Leaf 1	0.485
	CRR073301	Leaf 2	0.855
	CRR073302	Leaf 3	0.594
	CRR073303	Juvenile bud 1	0.530
	CRR073304	Juvenile bud 2	0.115
	CRR073305	Juvenile bud 3	0.404
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.042
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.186
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.119
	CRR073312	Silver flowering 1	0.032
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.027
	CRR073315	Gold flowering 1	0.024
	CRR073316	Gold flowering 2	0.060
	CRR073317	Gold flowering 3	0.593
	CRR073318	Tawny withering 1	0.470
	CRR073319	Tawny withering 2	0.651
	CRR073320	Tawny withering 3	0.589