Gene detail

Detail information of GWHGAAZE008137

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_008785246.1	PREDICTED: pre-mRNA-splicing factor SLU7 [Phoenix dactylifera]
Swissprot	tr\|Q9SHY8\|SLU7A_ARATH	Pre-mRNA-splicing factor SLU7-A
trEMBL	tr\|U5D9F6\|U5D9F6_AMBTC	Uncharacterized protein {ECO:0000313\|EMBL:ERN18865.1}
TAIR10	AT1G65660.1	Pre-mRNA splicing Prp18-interacting factor

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	62395801	62401013	+
GWHAAZE00000002	mRNA	62395801	62401013	+
GWHAAZE00000002	exon	62395801	62395971	+
GWHAAZE00000002	exon	62397001	62397164	+
GWHAAZE00000002	exon	62397261	62397373	+
GWHAAZE00000002	exon	62397772	62398137	+
GWHAAZE00000002	exon	62398313	62398448	+
GWHAAZE00000002	exon	62398551	62398850	+
GWHAAZE00000002	exon	62399058	62399274	+
GWHAAZE00000002	exon	62400296	62400399	+
GWHAAZE00000002	exon	62400936	62401013	+
GWHAAZE00000002	five_prime_UTR	62395801	62395955	+
GWHAAZE00000002	CDS	62395956	62395971	+
GWHAAZE00000002	CDS	62397001	62397164	+
GWHAAZE00000002	CDS	62397261	62397373	+
GWHAAZE00000002	CDS	62397772	62398137	+
GWHAAZE00000002	CDS	62398313	62398448	+
GWHAAZE00000002	CDS	62398551	62398850	+
GWHAAZE00000002	CDS	62399058	62399274	+
GWHAAZE00000002	CDS	62400296	62400399	+
GWHAAZE00000002	CDS	62400936	62401013	+

Transcript Sequence
>GWHTAAZE008145 ATTTGAGGATAGAGGTCGACAACCACCGTGCACGGCGCACCACCATAACCGACCGTCAATCGACCTGAGGATTCATCTTTCTCTAGGGTTCATATTCTTCATTACCAACTTTCTTTGCCTATCTAGGGTTTCTTTGCATCTACGATACAGGAAACATGGCGACTGCATCAGTGGCATTTAAATCGAGGGAGGACCATCGAAAGCAGATGGAATTGGAAGAAGCACGTAAGGCTGGGCTTGCACCAGCTGAGGTGGATGAGGACGGAAAAGAAATCAATCCTCATATTCCTCAGTATATGTCATCTGCTCCTTGGTATCTCAATGCTGAGAGACCGAGTTTAAAACATCAACGTAAATGGAAATCAGACCCCAATTATACGAAATCATGGTATGACAGAGGAGCCAAAATATATCAGGCTGACAAGTACAGAAAGGGTGCATGTGAGAAGCCCCGCAAATTGGGAGCGAAGTGGACAAGCAAAAACATTGCGCCCGATGAGAAAATCGAGACCTTTGAGCTTGATTATGATGGAAAACGGGATCGTTGGAATGGATACGACGCATCATCATATGCCCATGTCATTGAAAGATATGAAGCTAGAGATGAAGCTAGAAGGAAATTCTTGAAGGAACAGCAGCTTAAAAAGTTAGAGGAAAAGAACAATAACCAAAATGGAGAAGATAGTGATGACGAAGAAAATGAAGATGCCTTGAAGGTAGATGAAGCCAAGGTTGATGAGAGCAAACAGATGGATTTCGCAAAGGTTGAGAAGCGTGTGCGTACCACTGGTGGTGGAAGCACTGGAACTGTTAGGAACCTGCGTATTCGAGAAGACACAGCAAAATACCTTCTTAATCTTGATGTCAACTCCGCTCACTATGATCCCAAGACCCGATCCATGCGTGAGGATCCTCTTCCAGATATGGATCCAAATGAGAAGTTCTATGCTGGAGATAATCAAAATAGAGTGAGTGGTCAAGCTTTGGAGTTTAAGCAGCTCAATATCCATGCTTGGGAAGCATTTGAAAAGGGAAACGATGTTCATATGCAAGCAGCTCCATCCCAAGCTGAATTGCTTTACAAAAATTTTAAAGTCAACAAGGAGAAATTGAAGTCCCAAGTGAAGGAGACAATTATGGATAAGTATGGCAATGCAGCCACTGACGATGCACTTCCAGCAGAGCTGTTACTCGGACAAAGTGAAAGAGAAGTTGAATATGATCGTGCGGGTAGGATCATAAAGGGCCAGGAGATGGCCCTTCCAAAGAGCAAGTACGAGGAGGATGTTTTCATAAACAATCACACGAGTGTATGGGGTTCATGGTGGAAGGATCATCAGTGGGGATATAAGTGCTGCAAGCAGTTTATTAGAAACAGCTATTGTACAGGTATTGCCGGAATTGAAGCTGCCGAAGCTGCAGCAGACCTCATGAAGGCAAACATTGCTCGGAAAGAGGCTGCAGAAGAGGTGCCTGCCATGACTGAGGAGAAACAACTTGCTACCTGGGGCACTGATATACCAGAGGATTTAGTTCTGGACCAGGAGAAACTGGCTTTATCGCTTAAGAAGGTTACTGCGGAGGATATGGAAGCATACAGGATGAAGAAAGTTCACCACGATGATCCAATGAAGGACTTTCTACACTAA

Network for GWHGAAZE008137

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11708.9	Slu7	122	389	1.20E-98

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12819	SLU7	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.766
	SRR3591706	second leaf	9.065
	SRR3591707	mature leaf	9.141
	SRR3591708	Shoot apex	10.362
	SRR3591709	Stem	16.068
	SRR3591710	White floral bud	25.805
	SRR3591711	White flower	30.108
	SRR3591712	Green floral bud	19.343
	SRR3591713	Yellow flower	25.599
SRP173429	SRR8316895	Juvenile bud stage	29.995
	SRR8316896	Juvenile bud stage	49.015
	SRR8316897	Juvenile bud stage	13.910
	SRR8316894	Third green stage	20.721
	SRR8316900	Third green stage	45.332
	SRR8316901	Third green stage	47.395
	SRR8316898	Complete white stage	19.810
	SRR8316899	Complete white stage	53.266
	SRR8316903	Complete white stage	27.933
	SRR8316902	Silver flowering stage	21.435
	SRR8316904	Silver flowering stage	32.860
	SRR8316905	Silver flowering stage	15.633
	SRR8316906	Gold flowering stage	49.467
	SRR8316907	Gold flowering stage	42.674
	SRR8316908	Gold flowering stage	37.073
SRP132670	SRR6706286	Control	70.569
	SRR6706287	Light intensity 50%	65.982
	SRR6706288	Light intensity 20%	67.740
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	34.585
	CNS0095593	Slightly white alabastrum(diploid) 2	36.244
	CNS0095594	Slightly white alabastrum(diploid) 3	37.744
	CNS0095595	Whole white alabastrum(diploid) 2	42.671
	CNS0095596	Whole white alabastrum(diploid) 3	37.337
	CNS0095597	Whole white alabastrum(diploid) 4	42.984
	CNS0095598	Silvery flower (diploied) 1	42.583
	CNS0095599	Silvery flower (diploied) 2	33.577
	CNS0095600	Silvery flower (diploied) 3	37.612
	CNS0095601	Golden flower (diploid) 1	35.075
	CNS0095602	Golden flower (diploid) 2	48.120
	CNS0095603	Golden flower (diploid) 3	43.025
	CNS0095604	Slightly white alabastrum(tetraploid) 1	41.313
	CNS0095605	Slightly white alabastrum(tetraploid) 2	35.354
	CNS0095606	Slightly white alabastrum(tetraploid) 3	39.589
	CNS0095607	Whole white alabastrum(tetraploid) 1	36.539
	CNS0095608	Whole white alabastrum(tetraploid) 2	33.841
	CNS0095609	Whole white alabastrum(tetraploid) 3	42.868
	CNS0095610	Silvery flower (tetraploid) 1	50.701
	CNS0095611	Silvery flower (tetraploid) 2	54.313
	CNS0095612	Silvery flower (tetraploid) 3	45.118
	CNS0095613	Golden flower (tetraploid) 1	34.810
	CNS0095614	Golden flower (tetraploid) 2	41.965
	CNS0095615	Golden flower (tetraploid) 3	49.402
CRA001975	CRR073297	Stem 1	61.867
	CRR073298	Stem 2	54.993
	CRR073299	Stem 3	47.315
	CRR073300	Leaf 1	65.728
	CRR073301	Leaf 2	60.367
	CRR073302	Leaf 3	47.979
	CRR073303	Juvenile bud 1	55.378
	CRR073304	Juvenile bud 2	44.745
	CRR073305	Juvenile bud 3	53.061
	CRR073306	Third green 1	32.492
	CRR073307	Third green 2	27.815
	CRR073308	Third green 3	23.387
	CRR073309	Second white 1	21.240
	CRR073310	Second white 2	31.869
	CRR073311	Second white 3	26.242
	CRR073312	Silver flowering 1	25.765
	CRR073313	Silver flowering 2	23.421
	CRR073314	Silver flowering 3	19.783
	CRR073315	Gold flowering 1	28.600
	CRR073316	Gold flowering 2	42.803
	CRR073317	Gold flowering 3	16.939
	CRR073318	Tawny withering 1	40.389
	CRR073319	Tawny withering 2	38.700
	CRR073320	Tawny withering 3	37.572