Gene detail

Detail information of GWHGAAZE008129

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP20327.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9FMP5\|CDPKH_ARATH	Calcium-dependent protein kinase 17
trEMBL	tr\|A0A068VI97\|A0A068VI97_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_1103 {ECO:0000313\|EMBL:CDP20327.1}
TAIR10	AT5G12180.1	calcium-dependent protein kinase 17

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	62230378	62232916	+
GWHAAZE00000002	mRNA	62230378	62232916	+
GWHAAZE00000002	exon	62230378	62231020	+
GWHAAZE00000002	exon	62231131	62231274	+
GWHAAZE00000002	exon	62231368	62231520	+
GWHAAZE00000002	exon	62231630	62231745	+
GWHAAZE00000002	exon	62231853	62232020	+
GWHAAZE00000002	exon	62232143	62232270	+
GWHAAZE00000002	exon	62232365	62232464	+
GWHAAZE00000002	exon	62232812	62232916	+
GWHAAZE00000002	CDS	62230378	62231020	+
GWHAAZE00000002	CDS	62231131	62231274	+
GWHAAZE00000002	CDS	62231368	62231520	+
GWHAAZE00000002	CDS	62231630	62231745	+
GWHAAZE00000002	CDS	62231853	62232020	+
GWHAAZE00000002	CDS	62232143	62232270	+
GWHAAZE00000002	CDS	62232365	62232464	+
GWHAAZE00000002	CDS	62232812	62232916	+

Transcript Sequence
>GWHTAAZE008137 ATGAGGGCAGCAATGCCGGAAAAGCTCAAGACAATTCCACCACGGCGCCTAAGTCCAATACTCCTCCTTCCACGGGAGGAGGAGGCTCCGGCCAATCCTTCAAACAAGCCTAATTCCTCCAAGCCAACACCGATTGGACCTGTTTTAGGCCGCCCAATGGAAGATGTGCGCACACTTTACACTATAGGGAAGGAGCTGGGCAGGGGCCAATTCGGGATCACTCATTTATGCACGGATAAGCAGACTGGCAATCAGTATGCGTGCAAGACAATAGCAAAAAGGAAGCTGGTTAACAAGGAAGACATAGAGGACGTGAGGAGGGAGGTACAAATAATGCATCATTTGACGGGGCAACCCAACATAGTGGAACTCAAGGGCGCTTTCGAGGACAAGCATTCAGTTCATCTGGTTATGGAGTTATGCGAAGGCGGAGAGCTGTTTGACCGAATCATTGCAAAGGGACATTACACAGAGAGGGCTGCTGCGTCTCTCCTCAGAACCATTGTAGAGATTGTCCATACTTGCCATTCCATGGGTGTCATTCATAGGGATCTTAAGCCTGAGAACTTCCTTCTTTTGAACAAGGATGAGAATTCCCCTCTTAAGGCTACCGATTTTGGTCTCTCTGTATTCTACAAGCAAGGAGAAGTTTTTAAAGACATAGTGGGTAGTGCATACTACATTGCACCTGAAGTATTGAAGAGAAAATATGGGCCTGAAGTTGATATTTGGAGCATTGGCGTCATGCTATACATTCTTCTCTGTGGTGTTCCACCCTTTTGGGCGGAATCGGAGCATGGGATATTTAATGCAATCTTAAGAGGGCACATTGATTTTACGAGCGACCCATGGCCCTCAATTTCACCTCAGGCCAAGGACCTTGTCAGGAAGATGTTGGCTTTAGACCCCTCAGAGAGGCTCACAGCACTTCAAGTTCTTAATCATCCATGGATTAAGGAGGATGGAGAAGCACCCGACACATTGCTAGACAATGCTGTACTTGGAAGGCTCAAACAATTCAGGGCAATGAACAAGTTCAAAAAAGTTGCTCTCCGGGTTATCGCAGGTTGCCTGTCAGAGGAAGAAATAATGGGATTAAAGCAAATGTTCAAGGGGATGGATGAAGACAATAGTGGTACCATAACACTTGAGGAGCTAAAGCAAGGACTTGCCAAACAAGGAACTAAGCTATCTGAATATGAAGTTAAACAGTTGATGGAAGCTGCCGATGCTGATGGAAATGGGACAATAGATTACGAGGAGTTCATTACAGCAACTATGCACTTAAACAGAATGGATAGAGAAGAGCATCTTTACACTGCATTCCAATACTTTGATAAAGACAATAGCGGGTATATTACTAAGGAAGAACTAGAGCAAGCTCTTCACGAATTTGGAATGGACGACGGAAGGGACATCAAGGAAGTCATGTCTGAAGTGGATTCCGATAATGATGGTCGGATCAACTATGATGAGTTTGTGGCCATGATGAGAAAAGGTAACCCGGATGTAGGAGCAAACCCCAAGAAACGACGTGATGTGCAGTTTGATGCATGA

Network for GWHGAAZE008129

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	60	318	1.50E-75
PF13499.7	EF-hand_7	366	426	1.90E-11
PF13499.7	EF-hand_7	435	498	1.50E-15

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CDPK

KEGG pathway

KO	Enzyme	pathway	mapID
K13412	CPK	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005509	molecular_function	calcium ion binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.258
	SRR3591706	second leaf	0.104
	SRR3591707	mature leaf	0.088
	SRR3591708	Shoot apex	0.065
	SRR3591709	Stem	1.801
	SRR3591710	White floral bud	184.327
	SRR3591711	White flower	7.802
	SRR3591712	Green floral bud	153.233
	SRR3591713	Yellow flower	6.810
SRP173429	SRR8316895	Juvenile bud stage	0.912
	SRR8316896	Juvenile bud stage	12.458
	SRR8316897	Juvenile bud stage	10.385
	SRR8316894	Third green stage	14.390
	SRR8316900	Third green stage	95.841
	SRR8316901	Third green stage	93.573
	SRR8316898	Complete white stage	0.025
	SRR8316899	Complete white stage	0.354
	SRR8316903	Complete white stage	0.057
	SRR8316902	Silver flowering stage	2.229
	SRR8316904	Silver flowering stage	4.342
	SRR8316905	Silver flowering stage	1.449
	SRR8316906	Gold flowering stage	0.620
	SRR8316907	Gold flowering stage	0.381
	SRR8316908	Gold flowering stage	0.219
SRP132670	SRR6706286	Control	56.850
	SRR6706287	Light intensity 50%	59.700
	SRR6706288	Light intensity 20%	54.529
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	69.437
	CNS0095593	Slightly white alabastrum(diploid) 2	59.823
	CNS0095594	Slightly white alabastrum(diploid) 3	83.377
	CNS0095595	Whole white alabastrum(diploid) 2	194.445
	CNS0095596	Whole white alabastrum(diploid) 3	219.058
	CNS0095597	Whole white alabastrum(diploid) 4	250.402
	CNS0095598	Silvery flower (diploied) 1	5.856
	CNS0095599	Silvery flower (diploied) 2	23.272
	CNS0095600	Silvery flower (diploied) 3	3.904
	CNS0095601	Golden flower (diploid) 1	8.728
	CNS0095602	Golden flower (diploid) 2	2.799
	CNS0095603	Golden flower (diploid) 3	3.500
	CNS0095604	Slightly white alabastrum(tetraploid) 1	199.378
	CNS0095605	Slightly white alabastrum(tetraploid) 2	219.129
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.128
	CNS0095607	Whole white alabastrum(tetraploid) 1	418.452
	CNS0095608	Whole white alabastrum(tetraploid) 2	471.211
	CNS0095609	Whole white alabastrum(tetraploid) 3	225.474
	CNS0095610	Silvery flower (tetraploid) 1	4.726
	CNS0095611	Silvery flower (tetraploid) 2	17.531
	CNS0095612	Silvery flower (tetraploid) 3	51.930
	CNS0095613	Golden flower (tetraploid) 1	6.047
	CNS0095614	Golden flower (tetraploid) 2	1.965
	CNS0095615	Golden flower (tetraploid) 3	17.927
CRA001975	CRR073297	Stem 1	10.309
	CRR073298	Stem 2	14.740
	CRR073299	Stem 3	3.943
	CRR073300	Leaf 1	92.264
	CRR073301	Leaf 2	59.041
	CRR073302	Leaf 3	23.565
	CRR073303	Juvenile bud 1	58.847
	CRR073304	Juvenile bud 2	43.376
	CRR073305	Juvenile bud 3	4.918
	CRR073306	Third green 1	27.908
	CRR073307	Third green 2	25.378
	CRR073308	Third green 3	26.748
	CRR073309	Second white 1	0.778
	CRR073310	Second white 2	6.456
	CRR073311	Second white 3	6.720
	CRR073312	Silver flowering 1	22.417
	CRR073313	Silver flowering 2	23.193
	CRR073314	Silver flowering 3	10.241
	CRR073315	Gold flowering 1	13.723
	CRR073316	Gold flowering 2	6.809
	CRR073317	Gold flowering 3	2.709
	CRR073318	Tawny withering 1	34.067
	CRR073319	Tawny withering 2	24.963
	CRR073320	Tawny withering 3	26.311