Gene detail

Detail information of GWHGAAZE008107

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011099649.1	0	PREDICTED: lysine-specific demethylase JMJ25-like [Sesamum indicum]
Swissprot	tr\|Q9SSE9\|JMJ25_ARATH	1E-85	Lysine-specific demethylase JMJ25
trEMBL	tr\|A0A068VEN2\|A0A068VEN2_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_338 {ECO:0000313\|EMBL:CDP19052.1}
TAIR10	AT1G62310.1	3E-106	transcription factor jumonji (jmjC) domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	61636766	61648866	+
GWHAAZE00000002	mRNA	61636766	61648866	+
GWHAAZE00000002	exon	61636766	61636843	+
GWHAAZE00000002	exon	61636944	61637065	+
GWHAAZE00000002	exon	61640468	61640567	+
GWHAAZE00000002	exon	61640669	61640810	+
GWHAAZE00000002	exon	61641317	61641380	+
GWHAAZE00000002	exon	61641471	61642215	+
GWHAAZE00000002	exon	61648468	61648866	+
GWHAAZE00000002	five_prime_UTR	61636766	61636843	+
GWHAAZE00000002	five_prime_UTR	61636944	61637054	+
GWHAAZE00000002	CDS	61637055	61637065	+
GWHAAZE00000002	CDS	61640468	61640567	+
GWHAAZE00000002	CDS	61640669	61640810	+
GWHAAZE00000002	CDS	61641317	61641380	+
GWHAAZE00000002	CDS	61641471	61642215	+
GWHAAZE00000002	CDS	61648468	61648866	+

Transcript Sequence
>GWHTAAZE008115 TCCCAAGCGAGATTGAGACTGAGCAGAGAAGAGCGTTATGCCACTAGGCCTGTAAAGAAGAACAATGATTCCAATAATAAGAAGAAGAATGAAATTGATTCAAATACTTGTCACCAGTGCAAGAGGAATGACAAAGGACGAGTTGTTCGATGCCTCAAATGTAGCCGAAAGCGATTTTGCGTTCCCTGCATGACTAGATGGTACCCTAAGATGTCAGAGGATGATTTTGCTGAAGCTTGCCCTGTTTGTCGCAGTAATTGCAATTGCAAATCATGCTTACGCTTAGATGTACCGTTTAAAGACTTGGAGAGATCAAAATTGGAATTCACCAATAATGAAAAATTCCAACACTCAAAATATATCTTGCATGCACTTCTCCCTTTTTTGAGACAATTCAGCGAGGAACAAATTCAGGAGACAGAGATGGAGGCTAATATTCAAGGTTTACCATTATCAGAGATAAAAATACAAGATGCAGACTGCGGCTTGAATGAGCGTATGTTTTGCAACAACTGCAAAACATCCATAGTCGACTTCCATAGGAGCTGTCCACGATGTTCTTATGATCTTTGCCTTATCTGTTGCCAAGAGATGCGGAAAGGTTGCTTGCGAGGAGGTGCTGGTGAAGTTGTCAATACTCATTACGTTGACAATGGGTTTGACTACTTACATGGTGGGGAATCTACACGTAGTGGAACTTCAGGTATACCTGTTGAAACTAGCCCTAGAAGGGATCATAGTAACTCTGCACCCGAATGGAAATCCCAGGAAAATGGCAGTATTCCATGCCCCCCAGTTGAGTTGGGTGGTTGCGGTGAAGGCATTTTAGAATTGAAGCATATAATACCAGAAGATTGGGTTTCAAAGTTGTTAGTAAAAGCGGATAAATTAGGCAGTGAATACGAACAAATGGATATACCTGAAACTACTGAGCAATGGTGCTGTTGTTTGAATTCAGTGCAAGAAGATGTTGGGATTGGCATAAAGAATTCCAGGAAAGCTGCCTCTCGAGAAGATTCCGAGGACAACTATTTATATTGTCCAATTGCTAAAGATATTCAACCTGAGGATTTGAAACATTTCCAGAGGCACTGGATCAAAGGGGAGCCGGTAATAGTGAGTAATGTTCTCGAGACTTCGTCTGGTTTGAGCTGGGAGCCGATGGTGATGTGGCGGGCTTTCCGGCAGATTATAAGCGATAAAAGTTCCCTTCTTAATGTGAATGCTATAAATTGTTTGGATTGGTGTGAGGTAGATATTAACATACACCGCTTCTTCAAAGGATATCTGGAGGGTTTTGATGACTTTTATGGGTGGCCTCAGATACTGAAGTTGAAAGACTGGCCCCCATCTACTTTATTTGAGGAGCGGTTACCTCGTCATGGTGCTGAGTTTATCAGTTGCTTGCCCTTCAAGGAGTATACGCATCCGCGTAGTGGATACTTAAATCTGGCTGTCAAATTACCAGAAAAATCTGTGAAGCCAGACATGGGGCCAAAAACGTATATTGCTTATGGATTTGCTGGACTTAGAGATTTGAAGAAGAAGAAGAACCTGTTTTCCTTGATCGAAGAGAGGGAAGAAGAACTTGTCTTCCTTGCTCGAGAGAAACAGACTAACAGAGAAAGATCGAGAAGGGGAACTAAATAA

Network for GWHGAAZE008107

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15601	KDM3	Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.494
	SRR3591706	second leaf	1.644
	SRR3591707	mature leaf	1.049
	SRR3591708	Shoot apex	5.607
	SRR3591709	Stem	2.195
	SRR3591710	White floral bud	3.762
	SRR3591711	White flower	3.536
	SRR3591712	Green floral bud	2.666
	SRR3591713	Yellow flower	2.983
SRP173429	SRR8316895	Juvenile bud stage	3.237
	SRR8316896	Juvenile bud stage	2.771
	SRR8316897	Juvenile bud stage	1.406
	SRR8316894	Third green stage	1.654
	SRR8316900	Third green stage	3.146
	SRR8316901	Third green stage	1.560
	SRR8316898	Complete white stage	0.162
	SRR8316899	Complete white stage	3.117
	SRR8316903	Complete white stage	1.313
	SRR8316902	Silver flowering stage	0.466
	SRR8316904	Silver flowering stage	0.682
	SRR8316905	Silver flowering stage	0.227
	SRR8316906	Gold flowering stage	1.020
	SRR8316907	Gold flowering stage	1.158
	SRR8316908	Gold flowering stage	0.521
SRP132670	SRR6706286	Control	3.284
	SRR6706287	Light intensity 50%	3.428
	SRR6706288	Light intensity 20%	4.201
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.174
	CNS0095593	Slightly white alabastrum(diploid) 2	1.033
	CNS0095594	Slightly white alabastrum(diploid) 3	1.283
	CNS0095595	Whole white alabastrum(diploid) 2	1.115
	CNS0095596	Whole white alabastrum(diploid) 3	0.440
	CNS0095597	Whole white alabastrum(diploid) 4	0.694
	CNS0095598	Silvery flower (diploied) 1	3.520
	CNS0095599	Silvery flower (diploied) 2	2.801
	CNS0095600	Silvery flower (diploied) 3	2.862
	CNS0095601	Golden flower (diploid) 1	2.428
	CNS0095602	Golden flower (diploid) 2	3.180
	CNS0095603	Golden flower (diploid) 3	3.450
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.209
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.306
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.087
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.790
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.385
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.883
	CNS0095610	Silvery flower (tetraploid) 1	1.813
	CNS0095611	Silvery flower (tetraploid) 2	2.861
	CNS0095612	Silvery flower (tetraploid) 3	1.170
	CNS0095613	Golden flower (tetraploid) 1	1.295
	CNS0095614	Golden flower (tetraploid) 2	2.251
	CNS0095615	Golden flower (tetraploid) 3	1.915
CRA001975	CRR073297	Stem 1	4.553
	CRR073298	Stem 2	6.778
	CRR073299	Stem 3	4.716
	CRR073300	Leaf 1	3.653
	CRR073301	Leaf 2	2.409
	CRR073302	Leaf 3	3.231
	CRR073303	Juvenile bud 1	1.732
	CRR073304	Juvenile bud 2	1.265
	CRR073305	Juvenile bud 3	2.123
	CRR073306	Third green 1	0.481
	CRR073307	Third green 2	0.222
	CRR073308	Third green 3	0.565
	CRR073309	Second white 1	0.181
	CRR073310	Second white 2	0.746
	CRR073311	Second white 3	0.381
	CRR073312	Silver flowering 1	0.085
	CRR073313	Silver flowering 2	0.204
	CRR073314	Silver flowering 3	0.229
	CRR073315	Gold flowering 1	0.317
	CRR073316	Gold flowering 2	1.063
	CRR073317	Gold flowering 3	0.235
	CRR073318	Tawny withering 1	1.025
	CRR073319	Tawny withering 2	1.268
	CRR073320	Tawny withering 3	1.350