Gene detail

Detail information of GWHGAAZE008097

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002272045.1	PREDICTED: diacylglycerol kinase 2 [Vitis vinifera]
Swissprot	tr\|Q9FFN7\|DGK2_ARATH	Diacylglycerol kinase 2
trEMBL	tr\|F6H4G6\|F6H4G6_VITVI	Diacylglycerol kinase {ECO:0000256\|RuleBase:RU361128}
TAIR10	AT5G63770.1	diacylglycerol kinase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	61202904	61212090	-
GWHAAZE00000002	mRNA	61202904	61212090	-
GWHAAZE00000002	exon	61210951	61212090	-
GWHAAZE00000002	exon	61208013	61208388	-
GWHAAZE00000002	exon	61207826	61207902	-
GWHAAZE00000002	exon	61205967	61206086	-
GWHAAZE00000002	exon	61205721	61205885	-
GWHAAZE00000002	exon	61204281	61204418	-
GWHAAZE00000002	exon	61202904	61203068	-
GWHAAZE00000002	CDS	61210951	61212090	-
GWHAAZE00000002	CDS	61208013	61208388	-
GWHAAZE00000002	CDS	61207826	61207902	-
GWHAAZE00000002	CDS	61205967	61206086	-
GWHAAZE00000002	CDS	61205721	61205885	-
GWHAAZE00000002	CDS	61204281	61204418	-
GWHAAZE00000002	CDS	61202904	61203068	-

Transcript Sequence
>GWHTAAZE008105 ATGATCGACATCACTACATTGTTAAGGTTTCTAACAAGCTCAGATTCTTATGGTCCCCTTTTTGGATGGGTGGTTACGGGATCATTTGGGCTTTTAGCTGTTATATATGCATTTCTTAAATGGCAGAGAAAAACGTCTCTTAATTGGGTTAAAGCTGCTGCTAGAGCAAAGAAGAAGGCCTGGAAGAAGCTAAAGGTTCCTTTATCATACCATACATGGATAGAAGATTTTGCAAACGGTAAACAGCCATCTACATGCTGTGTTTGCCTAACTTCATTGTTATGCCCACAAAGTTTAGGCGGCTCAAAAGGCACAGCACATTCTCAGGTACATCGTTGTTCTCTTTGTGGAGTGGCAGCTCATTTTCGCTGTTCTCAGTTTGCAGCAAAAGATTGCAAGTGCGTAGCTCAAGCTGGGTTTAGCCATGTGCAACACCAGTGGTCAGAGAGATGGATTAAGATGGATGAGAATTTTGAGATGTCTGCTTTCTGTTTTTACTGTGATGAACCGTGTGGTGTTCCTTTTATTGATGCTTCCCCAACATGGCATTGCTTGTGGTGTCAGCGTCTTATACATATTAAATGCCATGCCAAAATGACTGAAGAATCGGGTGATGTTTGTGATTTGGGTTCCCTTAGAAGGGTCATCCTCTCTCCACTCTCTGTGAAAGAAGTTGAATGTGAGACAAATAGAGGTGGAATGCTGAGTAGTATTACGGAGGAGATTATTGTCTCTTCTGTTCGTGGTCAAATTAGAAGGAGGCGCCACAAGAACAATAAACATGGAAACAACAGCTCTGTTAATAGTAAGCTACAAGAAGACAATTCAGCTGCCAATACTGTGCTTCAATATGTACTCAATGGCCTTGCTGGTTTGAAGAAAAGCAGTGGTGAAAGAAAAAATGAAGAACAATTATTGAAGGATGGTGGGGTAATCAGTAGTAAGAAAGAAGCCCACCAGAATGGGGGGCTATTCAATAAAAAGCCTGAAATTTCTTTCTCCAGTCAATCTGAGCGGTATACATTAGTCGATTTGCCAGCAGATGCAAGACCTCTTCTAGTATTCATCAATACTAAGAGCGGGGCTCAAAATGGTCCTTCTCTTAAGAGGAGATTGAACATGCTATTGAATCCTGTGCAGGTGTTTGAACTCAGTTCCTCTCAAGGGCCTGAGGCCGGTTTAAAGTTTTTCAGTAACATGCAATATTTCCGGGTTTTGGTTTGTGGTGGAGATGGAACTGTCGCTTGGGTACTTGATGCAATTGAGAGGTATAATTTTGAATCACCTCCACCTGTTGCTATTCTTCCCCTTGGCACAGGAAATGACTTGTCACGGGTTTTGAGATGGGGAGGAGGATTCTCTACTATCGAAGGACAAGGTGGCTTAAGCACTCTTCTGTATGACATCAACCATGCGGCAGTTACAATGCTAGATCGTTGGAAGGTTAACATTATAAAAGAAAAACCCGATAGCGATACAGATAAAGTACAATCCAAGTTCATGATGAACTATTTAGGCATCGGATGTGATGCAAAGGTTGCATATGAATTCCACATGAATCGGGAAGAGAACCCTGAGAAGTTTTATAGTCAGTTTGTGAATAAATTGAGATATGCAAAAGAAGGTGCCAGGGATATGGTTGACAGAACTTGTGCCGACTTACCATGGCAAGTTTGGCTTGAAGTTGATGGAAAGGACATCCATATTCCAAAGGATGCCGAGGGTTTAATAGTGCTCAACATAGGCAGCTATATGGGCGGAGTAGATCTTTGGCAAAATGAATATGAGCATGACGATAATTTCAATCTTCAGTACATGCACGACAAAATGCTCGAGGTTGTTTGTGTTTCTGGAGCATGGCACCTTGGCAAGCTTCAGGTTGGACTCTCACAGGCAAGGAGACTAGCCCAAGGGAAAGCCATACGCATACATTCCTCCAGTCCTTTCCCAGTTCAAATAGATGGCGAACCTTTTATCCAACAACCTGGATGTTTAGAAATACAACATCACGGACAGATGTTTATGTTGAGGAGGGCATCAGTAGCAGGAGCCCAAGAACCAAGAGGACATGCGGCAGCTATAATGACGGAGGTTTTGGTGGATGCAGAGTGTAGAGGCGTCATTAATGCTTCTCAGAAGAGATCTCTTCTCCAGGAGATTGCCCTCCAGCTCTCCTCTTAA

Network for GWHGAAZE008097

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00130.23	C1_1	145	204	1.90E-12
PF00781.25	DAGK_cat	351	452	2.60E-26
PF00609.20	DAGK_acc	500	657	1.40E-58

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00901	dgkA, DGK	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerolipid metabolism	map00561
		Glycerophospholipid metabolism	map00564
		Phosphatidylinositol signaling system	map04070
		Phospholipase D signaling pathway	map04072
		Axon regeneration	map04361

Gene Ontology

GO term	Ontology	Name
GO:0035556	biological_process	intracellular signal transduction
GO:0007205	biological_process	protein kinase C-activating G protein-coupled receptor signaling pathway
GO:0003951	molecular_function	NAD+ kinase activity
GO:0016301	molecular_function	kinase activity
GO:0004143	molecular_function	diacylglycerol kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.219
	SRR3591706	second leaf	3.979
	SRR3591707	mature leaf	5.662
	SRR3591708	Shoot apex	7.225
	SRR3591709	Stem	16.539
	SRR3591710	White floral bud	18.690
	SRR3591711	White flower	17.853
	SRR3591712	Green floral bud	23.868
	SRR3591713	Yellow flower	9.789
SRP173429	SRR8316895	Juvenile bud stage	29.585
	SRR8316896	Juvenile bud stage	51.670
	SRR8316897	Juvenile bud stage	44.660
	SRR8316894	Third green stage	5.557
	SRR8316900	Third green stage	17.120
	SRR8316901	Third green stage	19.871
	SRR8316898	Complete white stage	2.942
	SRR8316899	Complete white stage	17.166
	SRR8316903	Complete white stage	6.168
	SRR8316902	Silver flowering stage	3.504
	SRR8316904	Silver flowering stage	5.886
	SRR8316905	Silver flowering stage	3.242
	SRR8316906	Gold flowering stage	8.801
	SRR8316907	Gold flowering stage	8.828
	SRR8316908	Gold flowering stage	7.851
SRP132670	SRR6706286	Control	7.914
	SRR6706287	Light intensity 50%	8.994
	SRR6706288	Light intensity 20%	8.753
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	23.834
	CNS0095593	Slightly white alabastrum(diploid) 2	41.649
	CNS0095594	Slightly white alabastrum(diploid) 3	36.234
	CNS0095595	Whole white alabastrum(diploid) 2	53.116
	CNS0095596	Whole white alabastrum(diploid) 3	29.325
	CNS0095597	Whole white alabastrum(diploid) 4	43.514
	CNS0095598	Silvery flower (diploied) 1	19.366
	CNS0095599	Silvery flower (diploied) 2	33.484
	CNS0095600	Silvery flower (diploied) 3	31.672
	CNS0095601	Golden flower (diploid) 1	34.395
	CNS0095602	Golden flower (diploid) 2	62.462
	CNS0095603	Golden flower (diploid) 3	61.599
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.664
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.564
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.951
	CNS0095607	Whole white alabastrum(tetraploid) 1	37.065
	CNS0095608	Whole white alabastrum(tetraploid) 2	50.427
	CNS0095609	Whole white alabastrum(tetraploid) 3	27.860
	CNS0095610	Silvery flower (tetraploid) 1	12.343
	CNS0095611	Silvery flower (tetraploid) 2	12.586
	CNS0095612	Silvery flower (tetraploid) 3	13.591
	CNS0095613	Golden flower (tetraploid) 1	6.509
	CNS0095614	Golden flower (tetraploid) 2	9.585
	CNS0095615	Golden flower (tetraploid) 3	11.536
CRA001975	CRR073297	Stem 1	22.556
	CRR073298	Stem 2	18.240
	CRR073299	Stem 3	8.872
	CRR073300	Leaf 1	38.747
	CRR073301	Leaf 2	31.228
	CRR073302	Leaf 3	11.802
	CRR073303	Juvenile bud 1	25.801
	CRR073304	Juvenile bud 2	14.013
	CRR073305	Juvenile bud 3	16.482
	CRR073306	Third green 1	14.544
	CRR073307	Third green 2	12.014
	CRR073308	Third green 3	10.635
	CRR073309	Second white 1	14.167
	CRR073310	Second white 2	15.917
	CRR073311	Second white 3	13.000
	CRR073312	Silver flowering 1	27.728
	CRR073313	Silver flowering 2	27.679
	CRR073314	Silver flowering 3	36.283
	CRR073315	Gold flowering 1	6.084
	CRR073316	Gold flowering 2	5.731
	CRR073317	Gold flowering 3	4.070
	CRR073318	Tawny withering 1	19.020
	CRR073319	Tawny withering 2	20.418
	CRR073320	Tawny withering 3	10.552